Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01076 ATGATAACTGTAATCCTGAAATGCAAAAGTGTAGAGACAAATGACCGACACTTGTTGGCTTGTGGCTCTTCCTCAACCGTTGCACGTCCAAACAACAAGACTGGAGACACCTCCTTGTCAATCGTCTCTGAGCTTTCCGATCTCCGCCGCTCTCAATCTGTGTCACTCCCGGATAAGAGACCAACGTGTCAGTGTCCAAAAAGTTACTCTCTAGTTAATCCTGATGATCCATATGGTAGCTGCAAGCCAGATTTTATACAAGGATGTGAAGAAGATGAAATGAGTAAAAGAAAGGATCTCTATGACTTTGAGGTTTTGATTAACATTGATTGGCCTTTCTCAGATTCTGTGCTTCAAAGGCCTTTTACTGAAGAACTGTGTAAAGAAGCTTGTATGGGAGATTGCATGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGATGAAGAAGTTACCACTCTCAAATGGGAAAGTTGATCCAACACTTAATGGTGCTAAGGCTTTCTTGAAAGTGAGAAAAGATAATACCTCCCTCCAGTCCTTTGATTTTCCTCCATTTCCAATCATTGCAAACAAGAATAATAATAGGGAAACGTTGGTTTTAGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTCAATGCCGTATTGCTTGTAGCAATATGTTTCAGCACCTCCATGATTGTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGCAGAAGTGAAACTAGTGTTGAAACCAATTTGCGTTGCTTCACTTACGAAGAGCTTGAAGAAGCTACTAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATAGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTATTGGATCAAGCTCATAGAGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCATAAGAACTTAGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTACATGAGAAATGGCACTTTGGCAAGTTTACTTTTCAATGTTGATGAGAAACAGAAACCAAGTTGGAAACTAAGGCTTAAACTTGCAATAGGAATAGCAAGGGGAATTGTGTATTTACATGAAGAGTGCATTACTAGGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAACTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGAGCATTGGTTAAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTATTATTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 1599 0.3871 MITVILKCKSVETNDRHLLACGSSSTVARPNNKTGDTSLSIVSELSDLRRSQSVSLPDKRPTCQCPKSYSLVNPDDPYGSCKPDFIQGCEEDEMSKRKDLYDFEVLINIDWPFSDSVLQRPFTEELCKEACMGDCMCSVAIFRLGDSCWMKKLPLSNGKVDPTLNGAKAFLKVRKDNTSLQSFDFPPFPIIANKNNNRETLVLVVSVLFGSSAILNAVLLVAICFSTSMIVQYKKKLRRVSRSETSVETNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEYMRNGTLASLLFNVDEKQKPSWKLRLKLAIGIARGIVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITTQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVEHWLRVTMRHWMTKKSIIEVQVPPYPSQISIQYSLI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01076 532 SMART serkin_6 264 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01076 532 ProSiteProfiles Protein kinase domain profile. 264 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01076 532 SUPERFAMILY Protein kinase-like (PK-like) 245 500 IPR011009 -
Vifa3g01076 532 FunFam S-receptor-like serine/threonine-protein kinase 233 344 - -
Vifa3g01076 532 Pfam Protein tyrosine and serine/threonine kinase 266 483 IPR001245 GO:0004672|GO:0006468
Vifa3g01076 532 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 53 500 - -
Vifa3g01076 532 Gene3D Phosphorylase Kinase; domain 1 226 344 - -
Vifa3g01076 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
Vifa3g01076 532 Gene3D Transferase(Phosphotransferase) domain 1 345 518 - -
Vifa3g01076 532 ProSitePatterns Protein kinases ATP-binding region signature. 270 297 IPR017441 GO:0005524
Vifa3g01076 532 FunFam Putative receptor-like protein kinase 345 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01076 Vifa-Chr3 277555175 277560019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01076 214 492 Receptor kinase-like Gene Family AT2G23950 41.892 5.69e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa3g01076 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01076 - - vra:106773297 672.93