Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01062 ATGCAGGACAAAAAGATCGAAGCTCCCATTAAGGATGGTTGGATTGATGAATCAAAGGAAACAACAGATGATAGTAACGATCATATCCCAATTGACATCTATAATAAATGTTTTGGTGAAAAGCAAGAAGCCATTAAGATAATAGATCTGGAAGCTCGGAAGGGATATAATTGTGTTATTCATACAACTGCACGGAATTCATATGAGAAGTATATTGGTGATGGATGGTACGAATTTTACAAAGAGAAGAAGCTTAAAGCTGGAGATGAGTTATCTTTTAGCATGAGACCTCATGCAGATTTTATGTATGTTTTTGTAATTAGGAGTTGA 330 0.3485 MQDKKIEAPIKDGWIDESKETTDDSNDHIPIDIYNKCFGEKQEAIKIIDLEARKGYNCVIHTTARNSYEKYIGDGWYEFYKEKKLKAGDELSFSMRPHADFMYVFVIRS 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01062 109 SUPERFAMILY DNA-binding pseudobarrel domain 27 108 IPR015300 -
Vifa3g01062 109 Gene3D - 17 109 IPR015300 -
Vifa3g01062 109 Pfam B3 DNA binding domain 28 108 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01062 Vifa-Chr3 267299544 267300017 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g01062 B3 5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01062 - K09287 tpra:123886179 62.7734