Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01060 ATGCTCAGGCGCCGTGTTGAAGATGTTGAAGGCTCAATACCCCCAAAGGACTCCATAGTTTTACGATGTAAAATGTCATCTGTCCAGAGTGCTATTTACGACTGGGTCAAATCAACTGGTACTCTTCGTCTTGATCCCGAGGATGAGGAACGTAAGCTTCAGAGGAATCCGAACTACCCGGTGAAACAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGAAAAACATGCAATCATCCGTTGCTTAATTATCCTTTCTTTAGTGACTTATCTAAAAAATTCATTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTTATAAAACTTCAAAGAACTGGACATCGTGTTCTACTTTTCAGTACCATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCAGTGGCGAAGACTCGTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAAATGACTTCAATGGCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGCATTCGAGCCGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTTATTTATGATCCTGATCCAAATCCTAAAAATGAGGAGCAGGCTGTTGCCAGAGCTCATCGTATTGGACAGAAAAGACCGGTCAAGGTTATCTACATGGAAGCAGTTGTTGACAAAATCCCTAGTCCTCAGAAGGAAGATGAAATGAGAGGTGGAGGCACTGCTGATTCGGAGGATGAACTTGTAGGCAAGGATTGCTACATAGGATCTATTGAGGGCCTCATAAGAAACAATATTCAGCAATATAAGATAGATATGGCGGATGAGGTAATTAATGCTGGGCGTTTCGATCAAAGAGCAACACATGAAGAAAGGCGTTTGACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTATCCATGATGTGCCGTCACTGCAGGAGGTAAATCGCATGATTGCGGCTCGAGGAAGAAGGGAGAAGCGTTTCAAAAGCAGAGAGGACGATTGGCTTGAGACAGAGAAGAAAGTCATCACAATCCATCGACTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGCCATGTTGAAGATGTTGAAGGCTCACTACCCCCAAAGGACTCCATAGTTTTACGATGTAAAATGTCATCTGTCCAGAGTGCTATTTACGACTGGGTCAAATCAACTGGTACTCTTCGTCTTGATCCCGAGGATGAGGAACGTAAGCTTCAGAGGAATCCGAACTACCCGGTGAAACAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGGAAAACATGCAACCATCCGTTGCTTAATTATCCATTCTTTAGTGACTTATCTAAAAAATTCATTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACTGGACATCGTGTTCTACTTTTCAGTACCATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCACATTCGAGCCGCTGGGAAAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTTATTTGTGATCCTGATCCAAATCCTAAAAATGAGGAGCAGGCTGTTTCCAGAGCTCATCGTATTGGACAGAAAAGACCGGTCAAGGTTATCTACATGGAAGCAGTTGTTGACAAAATCCCTAGTCCTCAGAAGGAAGATGAAATGAGAGGTGGAGGCACTGCTGATTCGGAGGATGAACTTGTAGGCAAGGATCGCTACATAGGATCTATTGAGGGCCTCATAAGAAACAATATTCAGCAATATAAGATAGATATGGCGGATGAGGTAATTAATGTTGGGCGTTTCGATGAAAGAACAACACATGAAGAAAGGCGTTTGACTTTGGAGACCTTATTACATGATGAAGAGAGGTATCAAGAAACTATCCATGATGTGCCGTCACTGCAGGAGGTAAATCGCATGATTGCGGCGCGAGGAAGAAGGGAGAAGCGTTTCAAAAGCTGA 2004 0.4251 MLRRRVEDVEGSIPPKDSIVLRCKMSSVQSAIYDWVKSTGTLRLDPEDEERKLQRNPNYPVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKKFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAINDFNGPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSPQKEDEMRGGGTADSEDELVGKDCYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRATHEERRLTLETLLHDEERYQETIHDVPSLQEVNRMIAARGRREKRFKSREDDWLETEKKVITIHRLHQILEPFMLRRHVEDVEGSLPPKDSIVLRCKMSSVQSAIYDWVKSTGTLRLDPEDEERKLQRNPNYPVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKKFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLHIRAAGKGLNLQSADTVVICDPDPNPKNEEQAVSRAHRIGQKRPVKVIYMEAVVDKIPSPQKEDEMRGGGTADSEDELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINVGRFDERTTHEERRLTLETLLHDEERYQETIHDVPSLQEVNRMIAARGRREKRFKS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01060 667 Pfam Helicase conserved C-terminal domain 103 215 IPR001650 -
Vifa3g01060 667 Pfam Helicase conserved C-terminal domain 505 542 IPR001650 -
Vifa3g01060 667 CDD SF2_C_SNF 91 225 - -
Vifa3g01060 667 CDD SF2_C_SNF 456 552 - -
Vifa3g01060 667 Gene3D - 337 378 IPR038718 -
Vifa3g01060 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 333 IPR027417 -
Vifa3g01060 667 Gene3D - 505 659 IPR027417 -
Vifa3g01060 667 Gene3D - 10 230 IPR027417 -
Vifa3g01060 667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 105 282 IPR001650 -
Vifa3g01060 667 FunFam ATP-dependent helicase BRM 14 224 - -
Vifa3g01060 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 656 IPR027417 -
Vifa3g01060 667 Gene3D - 379 504 IPR027417 -
Vifa3g01060 667 SMART helicmild6 131 215 IPR001650 -
Vifa3g01060 667 SMART helicmild6 472 542 IPR001650 -
Vifa3g01060 667 PANTHER SNF2/RAD54 HELICASE FAMILY 503 658 - -
Vifa3g01060 667 Pfam SNF2-related domain 1 81 IPR000330 GO:0005524|GO:0140658
Vifa3g01060 667 Pfam SNF2-related domain 338 446 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01060 Vifa-Chr3 265916369 265923119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01060 476 579 RAD5 or RAD16-like Gene Family AT1G61140 30.556 3.58e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa3g01060 SNF2_N 3.5e-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01060 - - gmx:100807104 605.905