Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01059 ATGCTCCCTCTGCTTCCCTTATCCAACACAGCATCCTTTATCTTTATCTCATTAACCTTTCTACATCACACAATCTCCCTTTTATTTCTCTTACCCCCATTTCTACACAAAACCCACAATCCCATAACAAATCCCTTCATCCTCCCTTCCGTCTCCTCTTCAACACCGTATAATACCCCTCCGCCAATCGCTACAAACCCCTCCCATCAGCAAATCCCTCCGCCTTTCCACAATAACATCATAACATCTTCCTCAGCCGCACTAGTACCTCAGAGTCATAACCCTTCAGTTAATGGCAAAACCACAAACTCTACTGGTGTAGAACTAGATCTTGATCAATCCTCCTACAAGAAACCATTATCACAAGTGGTGGTCAAGTACAGAGAATGCTTGAAAAACCATGCAGCTGCAATGGGAGGAAATGCTACAGATGGTTGTGGTGAGTTCACGCCAAGTGGTGAACAAGGTTCCATAGAAGCACTCAACTGTTCGGCTTACCATTGTCACAGAAACTTCCATAGAAAGGAAATTGAAGGTGAAACTGATGAAGAAAACTACCAACATCACCATAACTCACCTTTCACCTTCAACTTCAACAGACAACAACAACAACAACATCACAGCATGAGGAAATTCATGTTACCTCTTCCTAATCAACCTCTCGGGCTTGGCTACCACCACCCTCACACTACTCCTAACTCTACATCAGCAGCAGTAACAGGTAACAACAACAATATTCTTCCTTCTAGAGCTGTAGCACCACCACCACATGGACATGGACACATCATTATGCCTTTCAACTACAACATACCTTCTGAATCTGATGAGCAAGAAGAACATGGTAGAACGCAGAGTCAGCATCAACAGGTAGTGATGAAAAAAAAGGTTCAGGACAAAGTTTACACAGGAGAAGAAGGAGAAAATGCTGAACTTTGCTGA 939 0.4313 MLPLLPLSNTASFIFISLTFLHHTISLLFLLPPFLHKTHNPITNPFILPSVSSSTPYNTPPPIATNPSHQQIPPPFHNNIITSSSAALVPQSHNPSVNGKTTNSTGVELDLDQSSYKKPLSQVVVKYRECLKNHAAAMGGNATDGCGEFTPSGEQGSIEALNCSAYHCHRNFHRKEIEGETDEENYQHHHNSPFTFNFNRQQQQQHHSMRKFMLPLPNQPLGLGYHHPHTTPNSTSAAVTGNNNNILPSRAVAPPPHGHGHIIMPFNYNIPSESDEQEEHGRTQSQHQQVVMKKKVQDKVYTGEEGENAELC 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01059 312 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 126 177 IPR006456 -
Vifa3g01059 312 Pfam ZF-HD protein dimerisation region 125 177 IPR006456 -
Vifa3g01059 312 MobiDBLite consensus disorder prediction 271 312 - -
Vifa3g01059 312 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 101 220 - -
Vifa3g01059 312 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 127 176 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01059 Vifa-Chr3 265777309 265778364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01059 115 180 ZF-HD Transcription Factor Family AT1G14440 74.242 4.51e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa3g01059 ZF-HD_dimer 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01059 - - tpra:123910799 282.722