Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01058 ATGACGCAATCTCACTCGCTTCAACCTCTCCTACACCACAGCCACAATAACATCATAACATCTTCCTCAGCCGCACTAGTACCTCAGAGTCATAACCCTTCAGTTAATGGCACAACCACAAACTCTACTGGTGTAGAACTAGATCTTGATCAATCCTCCTACAAGAAACCATTATCACAAGTGGTGGTCAAGTACAGAGAATGCTTGAAAAACCATGCAGCTGCAATGGGAGGAAATGCTACAGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAACAAGGTTCCATAGAAGCACTCAACTGTTCAGCTTGCCATTGTCACAGAAACTTCCATAGAAAGGAAATTGAAGGTGAAACTGATGAAGAAAACTACCAACATCACCATAAGTCACCTTTCACCTTCAACTTCAACAGACAACAACAACAACAACATCACAGCATGAGGAAATTCATGTTACCTCTTCCTGATCAACCTCTCGGGCTTGGCTACCACCACCCTCACACTACTCCTAACTCTACATCAGCAGCAGTAACAGGTAACAACAACAATATTCTTCCTTCTAGAGCTGTAGCACCACCACCACATGGACATGGACACATCATTATGCCTTTCAACTACAACATACCTTCCGAATCTGATGAGCAAGAAGAACATGGTAGAACGCAGAGTCAGCATCAACAGGTAGTGATGAAAAAAAAGGTTCAGGACAAAGTTTACACAGGAGCAGAAGGACAAAATGCTGAACTTTGCTGA 753 0.4329 MTQSHSLQPLLHHSHNNIITSSSAALVPQSHNPSVNGTTTNSTGVELDLDQSSYKKPLSQVVVKYRECLKNHAAAMGGNATDGCGEFMPSGEQGSIEALNCSACHCHRNFHRKEIEGETDEENYQHHHKSPFTFNFNRQQQQQHHSMRKFMLPLPDQPLGLGYHHPHTTPNSTSAAVTGNNNNILPSRAVAPPPHGHGHIIMPFNYNIPSESDEQEEHGRTQSQHQQVVMKKKVQDKVYTGAEGQNAELC 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01058 250 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 114 IPR006456 -
Vifa3g01058 250 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 155 - -
Vifa3g01058 250 Pfam ZF-HD protein dimerisation region 63 115 IPR006456 -
Vifa3g01058 250 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Vifa3g01058 250 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01058 Vifa-Chr3 265767053 265768669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01058 17 161 ZF-HD Transcription Factor Family AT2G02540 48.366 4.78e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa3g01058 ZF-HD_dimer 4.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01058 - - tpra:123910799 291.197