Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01055 ATGGCGGAAGAACAACCGTGTCAAGCTCCTGAAGGCCACCGTCTCTGCGCCAACAACTGCGGTATAATCGGTAATCCGGCCACCATGAACCTCTGCTCGAAATGCTACGGTGATATCCGGTTGAAGAATCAACAAGACGCTTCCACCAAATCCACCATCGAAAACGCTCTCTCATCTTCTTCCTCCGCCGCATCAATCGCATCCGTCGCATCTATTGCATCCATCGCCTCACCGCCGCTTTTCTTGTCAGAGTCCGCCGTTGTTTCGACGGTGGCTCCGACAGAGATCGCGCCGAGTTATGTGACTCAGATACCGGTTCAACCGAACCGATGCTTGAGTTGCAGAAAGCGCGTGGGATTGACCGGGTTTAAGTGTAAGTGCGGGTCTATGTTTTGTGGGGCCCACAGGTACCCGGAGAGACACGGGTGTGGGTTTGATTTTAAGACGGTGGGGAGAGAGGAAATAGCGAGAGCGAATCCTTTGATAAGAGCGGAGAAGCTGCAGAGGATATGA 513 0.5322 MAEEQPCQAPEGHRLCANNCGIIGNPATMNLCSKCYGDIRLKNQQDASTKSTIENALSSSSSAASIASVASIASIASPPLFLSESAVVSTVAPTEIAPSYVTQIPVQPNRCLSCRKRVGLTGFKCKCGSMFCGAHRYPERHGCGFDFKTVGREEIARANPLIRAEKLQRI 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01055 170 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Vifa3g01055 170 FunFam Zinc finger AN1-type containing 6 87 166 - -
Vifa3g01055 170 ProSiteProfiles Zinc finger AN1-type profile. 105 151 IPR000058 GO:0008270
Vifa3g01055 170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Vifa3g01055 170 Gene3D - 84 166 IPR035896 -
Vifa3g01055 170 Pfam AN1-like Zinc finger 113 147 IPR000058 GO:0008270
Vifa3g01055 170 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Vifa3g01055 170 SUPERFAMILY AN1-like Zinc finger 102 165 IPR035896 -
Vifa3g01055 170 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 170 - -
Vifa3g01055 170 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Vifa3g01055 170 Gene3D - 1 68 - -
Vifa3g01055 170 SMART AN1_Zf_4 111 148 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01055 Vifa-Chr3 262412399 262412911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01055 1 170 C2H2 Transcription Factor Family AT3G52800 52.542 2.54e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01055 - - csav:115709437 214.157