Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01047 ATGGGTTCATTTTCGGGGACTTGCGAAATTGTTGAAGCGAGGGAAGAACTAAAGACAGTGAAAGATTCGGGGAGATATCTGTCCAGTTCTGGATATGGTATGGCTGAGAAAAATCAGAAGCTTCCTGCGCTGAAACTGGGATACAAGTATAATCTAGATGATGATATTAACAAGCTGTTTGAATCAATTGCTCTCAAATCTTCATCAAGAGATTTGAGCTATCTACCAGATGGAACAAGTCCTAGGATGAAAAGTGCGTTAAAAAAGCCAATGATTGTGGGCATACCTCGATCTCCGCGAGTTGGGACTTCTGAGCCAGTCACTTTGAAGCAGGCATTAAGAGACCTATGTATATCTAAGGCATCGGAAATGGCTGCTACTAAGAGGTTATCAAAGTCAGGAGCTTCTCCAAGAATATCAGAGGTTGGGAAGATACAGACATTGTACAATTCGGTCGTCGCTGATGATGCTAGGAGATCCGGGCCTTCTAATGTTGACAGTAAACGGAGTTCAAATGAAATATCTCTGGTGCTAGAAGAACGCAAGTCACGTGCCCTGAATAAAGAATCTCAATCTCATCAAACTTCCAAAAGCACATCATTGAGCCAAAATGCTCATTCTTTCAAAATCACAGTTGCAACTACACAAAATGAAAGTGATTTGGAATGTTCATCAAGTAAAGTTAAGGATTCACTCCAATCATCAGTACCTTCTCAAATTGAAAATCAAACATCCGCCTCTTCTTCTATATCTTGTTGCAACACCAATGGAAGTAAAGTAGAGTTGCGTGAAAAAGATTCCTCCCCTAAGAAATTGGGAAATAAAGCATCTATGTCAAAGAATGTGCGGAAAGGTACATTACAAACTACATCTTCCTCGTCTACTTCAGTAAATGGTAGTAGAGTTTGTAAACTTTCGCGTAGCCCCCGAACAGTGAAATTGGCCATCAAAAACAAGGATTCAGGTAAGAAGAAACTAAAACAGGGTTCAGATTCTGCTTTATCTGCTCCTCCATGCAATGAAACAAATAGTAAGTCAGTTCCTGCTAGTACAACGCCACTTGTTTGCGAGAGATGTTGGTGTGAAATAGAAAATACAAATATAGAAAACAGCAAAGATATTGTAACATCGGGCTCTCTCAGCCCTGCAGATGGAATAAACTTGAAGAGTGTGCTCTCTGGGCCAGCTTCAACTGGTTGTAATAGCAGCCGAGAATTTGCAAAAATGAAAAAGAATAGCAGATTGAAAGAGCAGCTTGAATTTTCTCAGAGTTCAAAGAGCAGCCAAGGTGACTACAGTAGTAGTACAAGTACCAGCGACGAGAGTAACGTTAGTGGTTCTAGTTGCGGCAATAGACCTCACATGTCAAAGGATTTTAGATGGCAGGCCATACGGGATGCTCAAGTTCAGCACAGAGTCTTGGGCTTGAGACACTTCAATCTTTTGAAAAAACTTGGTTGTGGAGACATTGGTACTGTATATCTTTCAGAACTAATTGGCCAAAATTGTTTGTTTGCTATAAAAGTAATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGGGAAATTTTGCGAATGCTGGATCATCCTTTTCTTCCAACACTCTATGCGCAGTTTACATCAGAAAATCTGTCATGTCTGGTCATGGAGTACTGTCCTGGAGGAGATCTTCATGTTCTACGTCAGAAACAACTTGGTAGATGTTTTTCAGAGCCAGCAGCAAGGTTTTACGTAGCTGAAGTCCTTCTTGCTTTGGAGTACTTACACATGCTTGGAGTTGTTTACCGTGATTTGAAACCAGAAAACATTCTTGTTCGAGAAGATGGTCACATTATGCTCACCGATTTTGACCTTTCACTCAGGTGCGATGTTAGCCCAACGCTTCTGAAATCGTCTTCTGATAAAGACCCTGCCAAGGTTTCTGGCCCATATGCAAAGTCAAATTGCATTGAACCATTCTGCATTGAACCATCTTGTCAAGTTTCATGCTTCAGTCCTAGATTCTTACCACCTGCGGCAAAAGCAAGGAAGCTAAAAGCCGATCTTGCTGCTCATATCAAATCATTGCCACAGCTCGTGGCAGAGCCCACGGATGCTAGATCAAATTCATTTGTTGGTACTCATGAATACCTAGCACCCGAGATCATCAAAGGAGAAGGACACGGAGCTGCAGTTGATTGGTGGACATTCGGTGTTTTTCTTTATGAGCTTTTATACGGTAGAACACCCTTCAAAGGTTCCAATAACGAAGAAACCTTAGCCAATGTCGTCTTGCAAAATCTCAGATTCCCTGATAGCCCTTTTGTTAGTTTCCAAGCAAGGGATCTTATCAAAGGGTTGTTAGTTAAAGAGCCTGAAAACCGTTTGGGTACAGAGAAAGGCGCTGCAGAGATTAAACAACATCCCTTCTTCGAGGGCCTTAACTGGGCCTTAATACGATGCGCCATCCCACCAGAACTTCCAGACCTTTGTGAATTTGTGTTGGGAGTTTCAGACATGATTGCAGAGTCACAAAGCAATGGTGGTAAATATTTAGAATGTGCAACAACAGGAGAACAAGTGGAATTTGAGTTGTTTTAG 2601 0.4156 MGSFSGTCEIVEAREELKTVKDSGRYLSSSGYGMAEKNQKLPALKLGYKYNLDDDINKLFESIALKSSSRDLSYLPDGTSPRMKSALKKPMIVGIPRSPRVGTSEPVTLKQALRDLCISKASEMAATKRLSKSGASPRISEVGKIQTLYNSVVADDARRSGPSNVDSKRSSNEISLVLEERKSRALNKESQSHQTSKSTSLSQNAHSFKITVATTQNESDLECSSSKVKDSLQSSVPSQIENQTSASSSISCCNTNGSKVELREKDSSPKKLGNKASMSKNVRKGTLQTTSSSSTSVNGSRVCKLSRSPRTVKLAIKNKDSGKKKLKQGSDSALSAPPCNETNSKSVPASTTPLVCERCWCEIENTNIENSKDIVTSGSLSPADGINLKSVLSGPASTGCNSSREFAKMKKNSRLKEQLEFSQSSKSSQGDYSSSTSTSDESNVSGSSCGNRPHMSKDFRWQAIRDAQVQHRVLGLRHFNLLKKLGCGDIGTVYLSELIGQNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSENLSCLVMEYCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKSSSDKDPAKVSGPYAKSNCIEPFCIEPSCQVSCFSPRFLPPAAKARKLKADLAAHIKSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQNLRFPDSPFVSFQARDLIKGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEFVLGVSDMIAESQSNGGKYLECATTGEQVEFELF 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01047 866 Gene3D Transferase(Phosphotransferase) domain 1 559 627 - -
Vifa3g01047 866 ProSiteProfiles Protein kinase domain profile. 479 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01047 866 SMART serkin_6 479 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01047 866 MobiDBLite consensus disorder prediction 182 203 - -
Vifa3g01047 866 MobiDBLite consensus disorder prediction 272 305 - -
Vifa3g01047 866 FunFam Serine/threonine-protein kinase D6PK-like 477 562 - -
Vifa3g01047 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Vifa3g01047 866 PANTHER FLIPPASE KINASE 1-RELATED 190 831 - -
Vifa3g01047 866 CDD STKc_phototropin_like 477 830 - -
Vifa3g01047 866 SUPERFAMILY Protein kinase-like (PK-like) 455 828 IPR011009 -
Vifa3g01047 866 MobiDBLite consensus disorder prediction 333 349 - -
Vifa3g01047 866 Gene3D Transferase(Phosphotransferase) domain 1 704 825 - -
Vifa3g01047 866 Pfam Protein kinase domain 708 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01047 866 Pfam Protein kinase domain 480 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01047 866 FunFam serine/threonine-protein kinase D6PK-like 563 630 - -
Vifa3g01047 866 MobiDBLite consensus disorder prediction 418 451 - -
Vifa3g01047 866 MobiDBLite consensus disorder prediction 417 451 - -
Vifa3g01047 866 MobiDBLite consensus disorder prediction 189 203 - -
Vifa3g01047 866 MobiDBLite consensus disorder prediction 259 306 - -
Vifa3g01047 866 MobiDBLite consensus disorder prediction 319 349 - -
Vifa3g01047 866 FunFam serine/threonine-protein kinase D6PK-like 706 829 - -
Vifa3g01047 866 Gene3D Phosphorylase Kinase; domain 1 477 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01047 Vifa-Chr3 259790671 259793995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01047 1 866 AGC Kinase Gene Family AT3G52890 54.202 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa3g01047 Pkinase 2.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01047 - K08286 gmx:100813470 1271.14