Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01045 ATGAAGAACACAGGAGTTTCTGGAAAACCCAACAAAAGAACATACAAAAGAGTAACTGATGTTCCAATATCTGGAACCCTAGTTTCAATCGTCGTCGCTCCACCTTCCGTCGCTGTTGTCACCAGAATCTACAAAAGAAGAAGGAAAGGACAACAAAACACGCACCAGAATCAGAAGCAAAAGCGCCAAAGGGATGTAGTTCCCCTTTCAGAAGTTCTAACTGGGTTTAACCCAGACGCCGTCGGCATAATCATGAAGGTGATAGCTGCATACTTGCTCGCCGTTCTCGGAGGTAACAACACCCCCTCCGCCAAAACCATCAAGGACATCCTTTGCTCCGTTGGAGCAGAAGCAGAAGATGGCAACATTGAATTGTTTTTGTCTGAAATTAAGGGCAAAGATTTAGCCGAGGTGATTGCTTCTGGTAAGGAAAAGTTGGCATCAGTACCTGCTGGTGGTGGCGCCGTTGCTGCTTCTGCCGCACCTGCGAGCGGTGGTGCTGCTCCTGCAGCTGCTGAGGCAAAGAAAGAGGAGAAGGTTGAGGAGAAAGAAGAATCCGATGATGATATGGGATTCAGCCTTTTTGATTAA 591 0.4738 MKNTGVSGKPNKRTYKRVTDVPISGTLVSIVVAPPSVAVVTRIYKRRRKGQQNTHQNQKQKRQRDVVPLSEVLTGFNPDAVGIIMKVIAAYLLAVLGGNNTPSAKTIKDILCSVGAEAEDGNIELFLSEIKGKDLAEVIASGKEKLASVPAGGGAVAASAAPASGGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01045 196 Gene3D - 84 143 IPR038716 -
Vifa3g01045 196 FunFam 60S acidic ribosomal protein P2 84 143 - -
Vifa3g01045 196 CDD Ribosomal_P2 85 196 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa3g01045 196 MobiDBLite consensus disorder prediction 155 196 - -
Vifa3g01045 196 Hamap 50S ribosomal protein L12 [rpl12]. 86 196 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vifa3g01045 196 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 85 196 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa3g01045 196 Pfam 60s Acidic ribosomal protein 102 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01045 Vifa-Chr3 257904935 257909095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01045 85 196 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 68.750 1.18e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01045 K02943 - tcc:18590363 117.472