Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01039 ATGGATCAACTTGAACCTTTATCTACCAATAACTCTCTAGTTTTTCCACTCATCACTACCTTGATGATTACTTCAATATTAATCATGTGTTTCACAACTATTTTTCCATCTCTCACATCATGTTTCCACAAACTTTTTAGTACTAGTCTCTTTTGTAGTTGTAAAATTTGCCAAGCTTATCTAACTTCAAGTTGGTCAAAAGATTTCAACAATCTTTGTGATTGGTATACTCATCTCCTACAAAAATCACCAACAAAAACCATCCACATACATGTCCTAAGAAACACAATAACCGCAAATTGTGAAAACCTTGAGTACATACTCAAAACAAATTTCGAAAACTACCCAAAAGGAAAACCTTTCTCAACAATCCTTGGAGATTTTCTTGGGCGTGGCATCTTCAACGTGGATGGTGAACTATGGAAGTTCCAAAAGAAGATGGCAAGTCTAGAACTCAACAAAAACTCCATAAGATCCTTTGCCTTTGAAGTTGTCAACAACGAAATCCAAAACCGTCTCATCCCTCTACTCAAGAACCAAAACCAAGTTTTGGATTTACAAGACGTTTTCAAAAGATTCTCTTTTGATAGTATTTGCAGATTCTCCTTCGGTTTAGACCCTATGTGCTTAGAAAAATCACTACCCATGTCGGATTTCGCTCTTTCTTTCGATCTAGCATCAAAGTTATCAGCTGAAAGAGCCATGGTAGTCTCTCCACTAATCTGGAAAATCAAGAGATTCTTCAACATGGGTAGTGAGAAAGAGTTGAGAAAAAGCATCAACATCATTAACATGTTAGCCAAAGTTGTCATAAACCAAAAAAGAAAAATGGGGTTTTCTCATCATCAAGATTTGTTATCAAGATTCATGACTACAACAATTCACGACGACATGTTCCTTAGAGACATAGTCATAAGTTTCTTATTAGCCGGTCGCGACACGGTGGCGTCATCACTCACAAGTTTCTTTTGGTTATTAGCAAAAAATCGTCAAGTCGAGAGAGAGATTTTACTAGAAGCTGAACGAGTAATAGGACCACATGATAAAGAAAATAATTTTGGTATAACGAATTTCGAACAACTTAGTAGGTTACATTATCTACAAGCTGCAGCGTATGAGAGTATGAGGCTTTATCCACCAATTCAATTTGACTCAAAGTTTTGTTTGGTGGATGATGTTTTACCAGATGGTACAAAGGTGAAAAGTGGAACTAGGGTTACTTATCATCCTTATGCAATGGGTAAGTTGGAGGAATTATGGGGTGAAGATTGTTTGGAGTTTAAGCCTCAAAGGTGGTTGAAAGATGGTGTGTTTCAACCTACAAATCAGTTCAAGTATCCTATTTTTCAAGCTGGGTTGAGGGTTTGTATTGGGAAAGAAATGGCTTTGATGGAGCTTAAAACTGTGGCTATTTCTTTGCTTAGAATGTTTAGTATTGAATTGGAGGAAACATCAACAACAACGTTGGGTTGTGATAATCCTAGATTCTCTCCTGGTCTTACTGCCACTTTTGCTTTTGGTCTACCTGTGTTTGTTCGTGAAAGAGGAACCAGTTGTGAAGCATAG 1566 0.3704 MDQLEPLSTNNSLVFPLITTLMITSILIMCFTTIFPSLTSCFHKLFSTSLFCSCKICQAYLTSSWSKDFNNLCDWYTHLLQKSPTKTIHIHVLRNTITANCENLEYILKTNFENYPKGKPFSTILGDFLGRGIFNVDGELWKFQKKMASLELNKNSIRSFAFEVVNNEIQNRLIPLLKNQNQVLDLQDVFKRFSFDSICRFSFGLDPMCLEKSLPMSDFALSFDLASKLSAERAMVVSPLIWKIKRFFNMGSEKELRKSINIINMLAKVVINQKRKMGFSHHQDLLSRFMTTTIHDDMFLRDIVISFLLAGRDTVASSLTSFFWLLAKNRQVEREILLEAERVIGPHDKENNFGITNFEQLSRLHYLQAAAYESMRLYPPIQFDSKFCLVDDVLPDGTKVKSGTRVTYHPYAMGKLEELWGEDCLEFKPQRWLKDGVFQPTNQFKYPIFQAGLRVCIGKEMALMELKTVAISLLRMFSIELEETSTTTLGCDNPRFSPGLTATFAFGLPVFVRERGTSCEA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01039 521 CDD CYP86A 84 494 - -
Vifa3g01039 521 PANTHER CYTOCHROME P450 48 484 - -
Vifa3g01039 521 Pfam Cytochrome P450 101 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01039 521 SUPERFAMILY Cytochrome P450 70 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01039 521 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01039 521 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01039 521 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01039 521 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01039 521 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01039 521 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01039 521 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01039 521 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g01039 521 Gene3D Cytochrome P450 62 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01039 Vifa-Chr3 253677432 253678997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01039 43 515 Cytochrome P450 AT2G27690 57.054 0.0 560