Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01036 ATGGCTCAAAAGCACTTACACGAGTTACTTCAAGAAGATCAAGAACCATTTCTTCTAAACGACTACATTTCAGATAGACTTTACCAACTCAAAAGACTTTCATCAAACACTACTTTACAATTGCAGAAACAACAACATAAACCACCAACAACAAACGTTAATTTCTGCAAACACGTTTGTTTTTTCTCATTCCAAAACACACCGGATATTAGAAATTCACCGCTCAAAAGCCCGATCAGATCCTCAAATAATATCTTCCTCCAAATCCCAGCCAAAACTGCGTCGCTTTTACTCGATGCAGCTATCAAAATCCAGAGTAACAAACCCAAAAACAAAAACAAAAACAAATCCTTTGGGGTTTTCGGTTCGTTTTTCAAGAAACTAACTCAACGAAGCAGAAGCAAAACTGAAGGTGACGTTTCTGTTAAGGATATTTTGAGGTGGGATTCAAGAAATAGAAAATCTTTCAACCAAGGTGGCACTGAGGTGTGTTCTTGCAATGGAAGACATAGCAGTAGTGCTGTATGGTCTGAGAGCAACGAAGCGGAAACTTCAAGCAGTGGCCATTCTTGTGACTCAGTGGAAGAGGTTGAGTTTGTGATGATGAACACGAAGAAACAAAATGCAGATTGCGCTTGTTTTGATCAGCATGGGTTTTTCTGCGAAAGCCCTTTTCGTTTCATTCTCGAAAAGAGCCCCTTCACTTCCGGCCGCCGTACGCCGGAGTTTTCCTCGCCGGTGGATTCACCTAACCGCCACCAACCAGAGGACAAACAAAATAATGGAGGTGAAGGTGTTAACAAATTTGAATCACGAGAAGATGAAGAAGAGAAAGAACAGTGTAGTCCAGTCTCTGTTTTAGATACACCTTTTGAAGATTATCATGACGATGAATGTCATGAAAATGATGATGAAGAACGTGATTTTGATTTGGATTGTAGCTACGCCAACATGCAAAAAACCAAACAACAACTTTTAGAACGGCTTCGAAGATTTGAGCAACTCGCGGAGTTAAATCCACTAGAACTTGAGAAAAGAATGCAAGAAGACGACGACTACGAAATTTTTTATGAAAATGATGATGACGAAGATTGTGAAGAAAAGGCTCTTAGAGAAATAGTTTGTGAAATACTCTGCCATTCAAGTGACCATGAAAGATGGCAAGAGCAAGAAGTTCTTAAGAGACTTGTTTATGATCTCATTAAGGAGGAACTTAATTATTCACAAGATATGAACTGTGTAGTGAAAAGGGTATGCAAGAAGATGGAGTTGTGGAAAAAAGTGGAATCTAACACAATTGATATGATGATAGAAGAGGATTTCACTAGAGAGGAAATTGGGTGGAAGAAAAATGATGAGGTAACAAGAGAGTTGGCTGGAGAGGTTGAGGTTGCTATCTTTTGTTTTCTTGTTGATGAATTTTCAAAGGAATTAGTATGTTAA 1443 0.3881 MAQKHLHELLQEDQEPFLLNDYISDRLYQLKRLSSNTTLQLQKQQHKPPTTNVNFCKHVCFFSFQNTPDIRNSPLKSPIRSSNNIFLQIPAKTASLLLDAAIKIQSNKPKNKNKNKSFGVFGSFFKKLTQRSRSKTEGDVSVKDILRWDSRNRKSFNQGGTEVCSCNGRHSSSAVWSESNEAETSSSGHSCDSVEEVEFVMMNTKKQNADCACFDQHGFFCESPFRFILEKSPFTSGRRTPEFSSPVDSPNRHQPEDKQNNGGEGVNKFESREDEEEKEQCSPVSVLDTPFEDYHDDECHENDDEERDFDLDCSYANMQKTKQQLLERLRRFEQLAELNPLELEKRMQEDDDYEIFYENDDDEDCEEKALREIVCEILCHSSDHERWQEQEVLKRLVYDLIKEELNYSQDMNCVVKRVCKKMELWKKVESNTIDMMIEEDFTREEIGWKKNDEVTRELAGEVEVAIFCFLVDEFSKELVC 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01036 480 Coils Coil 315 335 - -
Vifa3g01036 480 MobiDBLite consensus disorder prediction 267 282 - -
Vifa3g01036 480 MobiDBLite consensus disorder prediction 236 303 - -
Vifa3g01036 480 PANTHER OS04G0572500 PROTEIN 1 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01036 Vifa-Chr3 251244384 251247202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01036 2 292 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 39.535 3.27e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01036 - - gmx:100782984 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01036 3 251244384 251247202 Vifa3g01036 3 251244384 251247202 ECH
Vifa5g03181 5 1055152365 1055155187 Vifa3g01036 3 251244384 251247202 PCT