Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01033 ATGGAAGACCACCATAACAATCATAGTCACCACCACCACCACCATCCGCAACAGCAACAGCAACAATACAACGGCATGTCAACTGATCTACGACACCTAGTTAACGGAACAAGGTCAACCCATTTCACTTCAATACCAACAGCCGATGAGTTTTTCACCGGTCACCGGAATCTGACTGCTTTGTTAACTACAACAACTCACCAAAACGAATACGAGATGATGATGTTGGGTCGTGGTGTTAATGTTCTCGAAGACTTCAATAACATAACCACTCATGTTCAACAACCACCACCACCACCTCCAACAACAACCACCACCACCACCACCGCTAGTGTCTCAACTCCTGAAACCACCGCTTGTATCGGCGGAGACTCTTCCACTGGAAGATGGCCCAGACAAGAAACTCTTACTCTTCTTGAGATCAGATCTCGTCTTGACCCTAAATTCAAAGAAGCTAATCAAAAGGGTCCCTTATGGGATGAAGTTTCTAGGATAATGTGTGAAGAACATGGATATCAAAGGAATGGAAAAAAGTGCAGGGAGAAATTTGAGAACCTATACAAATATTACAAGAAGACAAAAGAAGGCAAAGCAGGAAGACATGATGGTAAGAATTACAGATTCTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTCAACCAGAAACCAATTTTGTCAACAACTTCAATTTTCAAAACCCTTCAAAAACTTCAAACCAAGAGGGTTTTCATAATAATGATCATAGTTTAAGTCTCACTACTAACTCAACTGACTTTGAGATTGATACTTCGTCTTCGGATGATGAGAAGGGGAAGAGGAAGAGTAGTGGGAGGAGGAGTTGGAAGGTGAAGATAAAAGAGTTCATTGATTCACAAATGAAGAAGCTTGTGGATAAGCAAGAAGAGTGGTTGAGTAAACTTGTGAAGACACTTGAGGATAAGGAAAAGGAGAGGGTTTTGAGAGAGGAAGAGTGGAGGGCACAAGAAGCGAAAAGGGTAGAAAAGGAACAAAGGTTTTGGAGTAAAGAGAGAGCATGGATTGAAGCTAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATATAGGTGGAAGAGAAATGAAGGTTGAACTTGAAGGTCATAATCATAAGGGTGTAAATGTAATAAATGAAGGTGAGATTCATCAAAACAACATTGAAAACCAAAATGAAGATGGGAGTGAGATATTGAATAGTACTGTGAGAGGTACTGATAATAACTATCAAAGGGATTCTTTATCTTTACAAGAAGGAAACAAGAAGAGAAAGGAGAATTTTTACTTCAACAATAATGAACAATGTTCTATGTACAATCAAGGAAGTGGTTATTGTGATGTTAATCATCAAAGAGAAGAGATTGTGAAGCTACAAAGAAATGTTGATCATGGTTCTTCGCCTTCTGATTCTAATGTTGCTAATGTTGCTAATGGTGATGCTTGCTTTCCCTTCTTGATTAATGAGGGTGGAAGTTTGTGGGAGAATTTCGGCTTGAAGATCAATAAAGCGAACCAAAACAACTGA 1551 0.3939 MEDHHNNHSHHHHHHPQQQQQQYNGMSTDLRHLVNGTRSTHFTSIPTADEFFTGHRNLTALLTTTTHQNEYEMMMLGRGVNVLEDFNNITTHVQQPPPPPPTTTTTTTTASVSTPETTACIGGDSSTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMCEEHGYQRNGKKCREKFENLYKYYKKTKEGKAGRHDGKNYRFFRQLEALYGENSNQTSQPETNFVNNFNFQNPSKTSNQEGFHNNDHSLSLTTNSTDFEIDTSSSDDEKGKRKSSGRRSWKVKIKEFIDSQMKKLVDKQEEWLSKLVKTLEDKEKERVLREEEWRAQEAKRVEKEQRFWSKERAWIEARDAALMEALKNIGGREMKVELEGHNHKGVNVINEGEIHQNNIENQNEDGSEILNSTVRGTDNNYQRDSLSLQEGNKKRKENFYFNNNEQCSMYNQGSGYCDVNHQREEIVKLQRNVDHGSSPSDSNVANVANGDACFPFLINEGGSLWENFGLKINKANQNN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01033 516 PANTHER FI21293P1 95 387 - -
Vifa3g01033 516 Gene3D - 130 192 - -
Vifa3g01033 516 MobiDBLite consensus disorder prediction 91 111 - -
Vifa3g01033 516 FunFam trihelix transcription factor PTL-like 130 192 - -
Vifa3g01033 516 Pfam Myb/SANT-like DNA-binding domain 129 215 IPR044822 -
Vifa3g01033 516 ProSiteProfiles Myb-like domain profile. 122 187 IPR001005 -
Vifa3g01033 516 MobiDBLite consensus disorder prediction 219 266 - -
Vifa3g01033 516 MobiDBLite consensus disorder prediction 1 23 - -
Vifa3g01033 516 MobiDBLite consensus disorder prediction 219 281 - -
Vifa3g01033 516 CDD GT1 129 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01033 Vifa-Chr3 246803987 246806897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01033 129 511 Trihelix Transcription Factor Family AT5G03680 44.676 8.22e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa3g01033 Myb_DNA-bind_4 1.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01033 - - mtr:25483883 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01033 3 246803987 246806897 Vifa3g01033 3 246803987 246806897 ECH
Vifa5g03178 5 1053225176 1053227338 Vifa3g01033 3 246803987 246806897 PCT