Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01030 ATGAAGATGATGATAATAGAATGTTGTGTCTCTAGAAGTAGAACACGTGTATGTTCCACTCTTCCTCACACAAAATATCCATACAATATTACAAGAAGACCCTTATCTCTATCCCTCATCTCCACCACTTTCTCTGCTTTAATCTTCTCACTTCCTCCTCCACCTTCATCTTCTTTTCCTTCTCCCTTACCTTCTTCAAAACGTCCAATAGCAGATTTCTCTGAACTCCCCAATTCTGGTGGTGTTAAGGCTTTGGAACTCCTTGTTGGTTCTGGTGAAGTTCCCTCAGATGGAGACCAGGTTGAGATTCATTACTATGGTAGACTAGCAGCAAAACAAGGATGGCGTTTTGATTCAACCTATGAACACAAAGATGAAAATGGTGATCCTAGTCCTTTTGTCTTTGTCCTTGGTTCTGGTAAGGTAATTGGTGGAATTGATGTGGCAGTGAAATCCATGAAAGTAGGTGGAATTCGTAGAGTCATTATACCTCCATCACTTGGTTACCAAAACACATCACAGGAACCTATCCCACCTAATTTCTTTGACAGGCAGAGGCTGTTCACTACAATATTTAATCCAACTCGACTTGCAAATGGTGAAGGATCTACTCTAGGGACACTTATATTTGATATTGAATTGGTTAGCCTAAGGCATCTGTGA 663 0.4057 MKMMIIECCVSRSRTRVCSTLPHTKYPYNITRRPLSLSLISTTFSALIFSLPPPPSSSFPSPLPSSKRPIADFSELPNSGGVKALELLVGSGEVPSDGDQVEIHYYGRLAAKQGWRFDSTYEHKDENGDPSPFVFVLGSGKVIGGIDVAVKSMKVGGIRRVIIPPSLGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLRHL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01030 220 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 94 215 IPR001179 GO:0003755
Vifa3g01030 220 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP17-1, CHLOROPLASTIC 21 219 IPR044197 -
Vifa3g01030 220 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 98 218 IPR001179 GO:0003755
Vifa3g01030 220 SUPERFAMILY FKBP-like 76 218 - -
Vifa3g01030 220 Gene3D - 67 217 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01030 Vifa-Chr3 246087879 246088948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01030 70 220 Calmodulin-binding Proteins AT5G48570 33.553 1.03e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01030 - - cam:101514460 347.821