Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01029 ATGGAGAATTTGCGAAGACCGTTTGATAGATCCAAAGAACCGATTTTGAAGAGACCTAGATTAATGAAAGATCCGGACCGTGCTTCGAATTCGAGTGGTCCGATGATTCCACAGAGACAACAGCAAGTTACTTCTGCTTCACGCTTCAGACAAAATGATAGAGACGTGGAGAATGATGACGGTGGTTACCAGCCTCAGCCGCTGCCGTTTCAGGAGCTGGTGGCGCAGTATAAGAGTGCGCTTGCAGAGCTGACTTTCAATTCGAAACTGATAATTAACAACCTGACTAGAATTGCGGATGAAAATCGAGCTGCTGAGAAGGCTGTTGCTGCTACTATATGTGCTAACATTCTAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGCCAAACTACCCGAGGTGTTCTGCAAGGCATACAGACAGGTTGATCCTCCTGCCCGTCAAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGGCTATAGATAAAGAACTAGGCTTCACTCCAGCAGTCAATGGTTCGTCTTCAGCATCTGCTACACTCAGGAGTGATTCACAGGCACATCATCCACCTCATAGTATACATGTTAATCCCAAGTATTTTGAAAGACAGCGTGTTCAGGAGTCCAGCAGGACTAAAGGAGTTGTTGTTGATATGACTGGAGTAATTGCAATCTCAAATGATGACCATGTTGCTGTTAACATCTACTTATGGCTAAGTAATCAACACACTCATAGAGACCCATTTGATGATCCTGTTCCAGAAAAGAGCGCATCCTATGGAGGCAGTGAACATGGTTCCAATCTCTCAAGGAATATGGGCATGGGTATTGGCAGAACTGCTGGCAGCGTAACCGAGTTAGGACACAGAAATTTGTACAACAAAGCTGGTGCCGGTGTTTCAGGGACCATATCTGGGCAAAGAAATGGTGTTGGCCTCAAGCATAGTTTTTCAAATACAGAAGCTACTACTATTTCAGATGCACAGCATCATCCAACACGAAACATTACTGGCATAAAGAGAAATGTGATGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGACGAGATGCACACTGGATTGACTAGTCATGGTGTCCGTACCAACTTGGGCAACGATGCTTGGACTGCTGATGATGAGAATTTGAACGCTGAAGATAACCACCACCAAATCAGAAATGTTTTTAGGACAAATGTTGATAGAGAAATGACCAATAAATCTCAAGCCACTCAAAAGAAACAATTTCGGCATCATCCATCATTATCGTGGAAATTACAGGACCAGCAATCAATTGATGAATTGGATAAGGAACTGGGTCACTCAGATGGATGCATCCCAATGTCTGGTTCCTTACTAGGCAATGCAAACTCTTCTGCTGTCAGGATGGGGAATCGTGCTTTCCTGCCCAATGCAAGAATTGGGGGACAGCAATTTCATTCTGTAGGATCTGAATCCACTTCTGGGCAGTCACCTTTGCGACAACGCTCTCCCTCGCCACCAAGTATTGACCACACTTGTCTAATGGAAAATTTTGATAAACAAGACCATCCTCGCACTCGTAAAACATCTCATTTTTTGGGAGGTATGCAAAGCCAATATATTGAAGATTCTTCACCCACCCTTTCTCCTAATATTCAGGTTGGAGACTTGCAAAGATCATCACAGGTAAAAGACTTGCGGGGTCCATTACCTTCAGCGAGTTTTCAGTCAAGGTATCAACAACAACTGAGGTCTGCTCACACTGAAGTAAATGTTAAGAATGAGAAGCCACCCTTGTCCAATGTTTCTCTAGCCCGAGAAACCTCAGAGCAGGCAGCCACAAGTCATACAGAAGTTGCAAGTGTGAAGAGAAGAATATCATCCAACATGCCAATTAGTAGTAGTCTTCCATCTCTATTAGGGTCTCGGCCTTCTCAATCAGGCGGTTCTTCCCCTGCCACATTATTTTCTTCAGTGTCTACAAATGCTTCTCCATCTTCATCTGCTTTGCCAAAAAGACCTCAAAGAAAGGCTGAACAATCAATACGGACGTCTACTCTACCACCCGCTTCCTCGAATGTTAGCAGTGCCTCAGCCCAGACATCAGGTGCCACAAATAAAACCTCAAATCCACTTGCAAGCCTTTTAAGCTCATTAGTTGAAAAGGGTTTGATATCCACTGAAACTGAGACACCGGCTGAGGTACCATCTGAGGTGGTGGCTCGATTGGAAGATCACTGCGACAGCTTTAGTACAAGTAGCTCTATGCCTGTTGCTTCATTGTCTGGTTCTGCAGTTGTCCCTGTCCCTTCTATCAAAGATGAGTTAGATGATACTGCAAAAACACCTATGACCTTATCTGAATCAACCAACATAGATATTAGAAATGTCATTGGCTTTGAGTTTAAGCCTAATGTAATCAGAAAATTGCATCCATCTGTAATTAGTGGATTATTTGATGATTTTCCACATCATTGCAGCATTTGTGGCCTTAAGCTCAAATTCCAAGAACAGTTTAATAGACACTTGGAGTGGCACGCCACGAGAAAAAGAGAACACAGTGGTTTAACTATGGCCTCAAGATGGTATCTGAGGTCAACTGACTGGGTTGCTGGCCAAGCTGAATATTCATCTGAAAATGAGTTTACTGATTCTGTAGATTCACAAGACAAGGAAACAGACAAAAGTCAAGAGGATGCAATGGTTCTAGCAGATGAAAACCAATGCTTATGTGTGTTGTGTGGCGAGCTATTTGAAGATGTTTACTGTCAGGAAAATAGCGAATGGATGTTCAAAGGGGCTGTTTACGTGACTAACTCTGATAGCGATACTGAGACGGGAATCAAAGATACGAGTTCCGGAAGGGGTCCCATCATTCACACAAGATGCTTATCAGATAACTTGTTATCGAGTGTCCTCAAGATGGAACAGGATTGA 3012 0.4323 MENLRRPFDRSKEPILKRPRLMKDPDRASNSSGPMIPQRQQQVTSASRFRQNDRDVENDDGGYQPQPLPFQELVAQYKSALAELTFNSKLIINNLTRIADENRAAEKAVAATICANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDPPARQSMKHLFGTWKGVFPPQTLQAIDKELGFTPAVNGSSSASATLRSDSQAHHPPHSIHVNPKYFERQRVQESSRTKGVVVDMTGVIAISNDDHVAVNIYLWLSNQHTHRDPFDDPVPEKSASYGGSEHGSNLSRNMGMGIGRTAGSVTELGHRNLYNKAGAGVSGTISGQRNGVGLKHSFSNTEATTISDAQHHPTRNITGIKRNVMSSSWKNSEEEEYMWDEMHTGLTSHGVRTNLGNDAWTADDENLNAEDNHHQIRNVFRTNVDREMTNKSQATQKKQFRHHPSLSWKLQDQQSIDELDKELGHSDGCIPMSGSLLGNANSSAVRMGNRAFLPNARIGGQQFHSVGSESTSGQSPLRQRSPSPPSIDHTCLMENFDKQDHPRTRKTSHFLGGMQSQYIEDSSPTLSPNIQVGDLQRSSQVKDLRGPLPSASFQSRYQQQLRSAHTEVNVKNEKPPLSNVSLARETSEQAATSHTEVASVKRRISSNMPISSSLPSLLGSRPSQSGGSSPATLFSSVSTNASPSSSALPKRPQRKAEQSIRTSTLPPASSNVSSASAQTSGATNKTSNPLASLLSSLVEKGLISTETETPAEVPSEVVARLEDHCDSFSTSSSMPVASLSGSAVVPVPSIKDELDDTAKTPMTLSESTNIDIRNVIGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKFQEQFNRHLEWHATRKREHSGLTMASRWYLRSTDWVAGQAEYSSENEFTDSVDSQDKETDKSQEDAMVLADENQCLCVLCGELFEDVYCQENSEWMFKGAVYVTNSDSDTETGIKDTSSGRGPIIHTRCLSDNLLSSVLKMEQD 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01029 1003 SMART 558neu5 72 194 IPR006569 -
Vifa3g01029 1003 Pfam CID domain 78 188 IPR006569 -
Vifa3g01029 1003 MobiDBLite consensus disorder prediction 509 538 - -
Vifa3g01029 1003 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 42 991 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vifa3g01029 1003 FunFam polyadenylation and cleavage factor homolog 4 66 194 - -
Vifa3g01029 1003 MobiDBLite consensus disorder prediction 583 735 - -
Vifa3g01029 1003 MobiDBLite consensus disorder prediction 204 223 - -
Vifa3g01029 1003 Gene3D - 69 194 IPR008942 -
Vifa3g01029 1003 MobiDBLite consensus disorder prediction 1 65 - -
Vifa3g01029 1003 MobiDBLite consensus disorder prediction 274 299 - -
Vifa3g01029 1003 MobiDBLite consensus disorder prediction 598 735 - -
Vifa3g01029 1003 ProSiteProfiles CID domain profile. 69 197 IPR006569 -
Vifa3g01029 1003 MobiDBLite consensus disorder prediction 31 49 - -
Vifa3g01029 1003 CDD CID_Pcf11 74 190 IPR047415 -
Vifa3g01029 1003 ProSitePatterns Zinc finger C2H2 type domain signature. 851 871 IPR013087 -
Vifa3g01029 1003 MobiDBLite consensus disorder prediction 509 535 - -
Vifa3g01029 1003 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g01029 1003 SUPERFAMILY ENTH/VHS domain 72 194 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01029 Vifa-Chr3 245638368 245644258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01029 823 988 C2H2 Transcription Factor Family AT4G04885 35.714 1.48e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g01029 CID 4.4e-15 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01029 K14400 - gmx:100807857 1057.36