Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00983 ATGGAACAAACCATGAACAACATCAACAACAATGTTTCTTCAGTTTCTCAACCTCAACAAGTATTAACAAACCCATTACCTCAAATCATGAACATGAATATCGGAAACAGTGTTAATGTTGTTACTACTACTGCAACAACAACAACGTCATTGGTGGTTTCTACAGTAGCACTGTCAGCAGCAACAGCCACAACGCCGGGAAGTAGTGGTGGAGGAAGCTTTGATTTGTTTGGGAAGAAGAAAAGAGGTAGACCAAGAAAATATGATGCTGATGGAAACCTGAATCCTAACTACAAGAAGGTTGAAAAAACACCAACACAAACAACACCATTGTTACCACCACCACCTGGTTTCACTTTGTCTTCAAATGAGTTTTCCACCAAAAAGGGCCGTGGGAAACCAACTGGGTTTGGAAATTACCAAATCCTTTCTTCTTTTGGTGAAGTGTTTGCCAGCACTGCTGCTGTGGATTTTACACCTCATGTGGTTACAGTTTATACAGGAGAGGATGTTGGTGGAAAGATCTTGTCATTTGCACAGAAGAGTCCAAGAGCGATATGCATTCTTTCTGCCAATGGAGCTATTTCTAAAGTTACACTAAGGCAACTTGGGTCTTCTGGTGGTGGTATTTTGACTTATGAGGGTCGATTTGAGATCTTATCTTTGTCTGGATCATATACGGTCTCAGACACTAGCGGCATAAGAACTCGCGATGGTGGATTGAGTGTCTCACTAGCTGGTCCTGATGGCCGAGTGATCGGAGGTTCTGTTGCTGGTCTACTTACAGCTGCTGGTCCTATCCAAATTGTAGTGGGAAGTTTCACACCAGATGGGAACAACAAGACGCTCAAAAAGAAGTACCAACGGGAACAAATGATGGCGTCTCCAACTTCAACTGGTCCAGAAATGATGACAGCAGCAAGACCTTTCTCACAACAAGCAAATGCTCATGGCGAAAACTTTATGATACCTATTTTGTCTCAGTTACCCGATCATCAAAACCAGAGAGAATCTGTCAGCGTTTCAAGCGAAAAACTGAACTTAGATGACACACCTGATGCTGCTACTTGGACCGGTTCCGATGAGTATTCAGATCAAAGAACATCTCCAGATATCAATATTTCTTTGCCTGATGAATAG 1140 0.4246 MEQTMNNINNNVSSVSQPQQVLTNPLPQIMNMNIGNSVNVVTTTATTTTSLVVSTVALSAATATTPGSSGGGSFDLFGKKKRGRPRKYDADGNLNPNYKKVEKTPTQTTPLLPPPPGFTLSSNEFSTKKGRGKPTGFGNYQILSSFGEVFASTAAVDFTPHVVTVYTGEDVGGKILSFAQKSPRAICILSANGAISKVTLRQLGSSGGGILTYEGRFEILSLSGSYTVSDTSGIRTRDGGLSVSLAGPDGRVIGGSVAGLLTAAGPIQIVVGSFTPDGNNKTLKKKYQREQMMASPTSTGPEMMTAARPFSQQANAHGENFMIPILSQLPDHQNQRESVSVSSEKLNLDDTPDAATWTGSDEYSDQRTSPDINISLPDE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00983 379 ProSiteProfiles PPC domain profile profile. 155 299 IPR005175 -
Vifa3g00983 379 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 50 343 IPR039605 GO:0003680
Vifa3g00983 379 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 282 - -
Vifa3g00983 379 CDD DUF296 159 274 IPR005175 -
Vifa3g00983 379 MobiDBLite consensus disorder prediction 331 373 - -
Vifa3g00983 379 MobiDBLite consensus disorder prediction 331 379 - -
Vifa3g00983 379 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 275 IPR005175 -
Vifa3g00983 379 MobiDBLite consensus disorder prediction 62 120 - -
Vifa3g00983 379 MobiDBLite consensus disorder prediction 281 302 - -
Vifa3g00983 379 Gene3D - 160 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00983 Vifa-Chr3 241886403 241888692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00983 51 347 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 45.902 2.92e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00983 - - gmx:100779227 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00983 3 241886403 241888692 Vifa3g00983 3 241886403 241888692 ECH