Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00980 ATGGCATGCATGTGGCGCAAGAATGCCTGCAGTGGGAAGAAACCACCATCAGACGTCCCGAGAGGTCACTTGGCTGTGACTGTAGGAGAGGCAAACAGGAGGTTTGTGATAAGAGCTGACTACCTGAATCATCCAGTGCTTCAACAACTGCTAGACCAAGCATATGAAGGATATGGATTTAATAAGAGTGGTCCTCTGGCTATACCTTGTGATGAGTTCATATTTGAAGATATTCTTCATTCACTTGGAGGAGGGACACAGACACAGACACGCCGATCCTCTTCGCATGTGCTTACAAAAAAGATAGATTTGTGCTTTTCCAAAGACTCAGTACCACTACTTGAAGCTTTTGACAGCAAAAGGAGCAATAACTACAAGCATTAA 384 0.4427 MACMWRKNACSGKKPPSDVPRGHLAVTVGEANRRFVIRADYLNHPVLQQLLDQAYEGYGFNKSGPLAIPCDEFIFEDILHSLGGGTQTQTRRSSSHVLTKKIDLCFSKDSVPLLEAFDSKRSNNYKH 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00980 127 Pfam Auxin responsive protein 10 82 IPR003676 GO:0009733
Vifa3g00980 127 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 13 78 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00980 Vifa-Chr3 240019221 240019604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00980 1 79 Calmodulin-binding Proteins AT4G34750 56.098 1.30e-27 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00980 K14488 - gmx:100777611 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00980 3 240019221 240019604 Vifa3g00980 3 240019221 240019604 ECH