Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00979 ATGTTTTGGCCTACTAAACACTCGTGTGCTTCATTCACATTATGTGGGTTGCTATCAGATGCAACGTGGTTCAAGATGTTTGAACTCAAACAGTTGAGCCTTTCTGGTTGTGAAGAATTACTTGAAGTTCAGGCTTCTGCTTTTTCTAAGGACACACTTGTTACTTTGCTACTGGATGGGTGCAAAAAAGTGCCAAGTCTTATGGGTGAGAAGCATTTAAAATCTCTAGCAAACTTCAGTGTCAAAGGTTGCTATGGTCTGAAGGAATTTTCATTATCTTCGGATGCACTAAGAAGGTTGGATTTGAGCAATACAGGAATCGAAATATTGCATCCATCAATTGGTGGTATGACCAAGCTTTATTCGTTAAATCTAGAAGGTTTAAATCTAACAAGTCTACCGATTGAATTGTCTTACTTGGCACTTACTGAACTTCGGGTTTCTAAGTGCAGTGTAGTAACCAAATCAAAGTTAAAAGCCCTATTTGATGGTCTGAGCTCACTAAGATTACTACACTTGAAAGACTGTAGTAACTTGTTTGAACTCCCTGCAAACATTAGTTCTTTATCATCATTGCAAGAGTTAAGACTAGATGGAAGCAATGTGAAGGAGTTGCCTGCTAGCATCAAAGACCTCTTAGAGCTAGAAGTTCAGTCTTTAGACAATTGCAGTAAGCTTCAATGTCTGCCAGAACTGCCTTTAAGCATCAAAGAGTTTCAGGCTGGCAACTGCTCGTCGTTAACGACTGTATCCACTTTGAAGACTTTTTCAGTAAACATGATTGGACAGAACAAATACATTTCGATAACGAATAGCATTAAGATGAAACTGGATGGACCCTCCCTTGCCTGCATGACGGAAGATGCCGTGTTAACAATGAAAAGTGCTGCCTTTCACAATGTATTAGTGAGAAAGTACAGATTCCAAACCCACAGCTACAATTATAACAGCGCCGAGGTATGTCTGCCAGGACACAGAATTCCAAGTCAGTTCAAACAACGATCCACCACATACGCCTCCTTAACTATTGACGTTCTCAACTGGGTGGGCTTCATTTTAGCAGTTGTTGTTACTCCATCTAACATAACACAAGAGGGTGAATACTTTGTTGGAATCCTATGTCAGTGCTATTCGGAAGATGGAAGGACGGAAGTGGGAAATAAGTCTAAGTGGAAGCCTAAACTGGTTACAGATTTGGAAATGGATCATATTTTTGTATGGTATGATCCATTCCTTTGTGACACCATACTCAGAAGGAATGAAAGAAAGGTTTCTTTTAAATTCTATATTACAACTTATACAACTAGTGGCAGAGAACTTGGTGACCTTTTAAAAATCAAAGAGTGTGGGGTTTGTCCAATTTACTACTCAGAAAGTCAGAAGGTTTTAGGCACAGGGAATTTAGACAAGGACTTGGAAAAAGAGTTGTATCAGGAAATTGAACATGAGAGATCAGTTGAAGGCTATGATGAGGGAGAAGGCATTGATATCCAAATAGGAAACACAGACACAAGAGCTTAA 1521 0.3938 MFWPTKHSCASFTLCGLLSDATWFKMFELKQLSLSGCEELLEVQASAFSKDTLVTLLLDGCKKVPSLMGEKHLKSLANFSVKGCYGLKEFSLSSDALRRLDLSNTGIEILHPSIGGMTKLYSLNLEGLNLTSLPIELSYLALTELRVSKCSVVTKSKLKALFDGLSSLRLLHLKDCSNLFELPANISSLSSLQELRLDGSNVKELPASIKDLLELEVQSLDNCSKLQCLPELPLSIKEFQAGNCSSLTTVSTLKTFSVNMIGQNKYISITNSIKMKLDGPSLACMTEDAVLTMKSAAFHNVLVRKYRFQTHSYNYNSAEVCLPGHRIPSQFKQRSTTYASLTIDVLNWVGFILAVVVTPSNITQEGEYFVGILCQCYSEDGRTEVGNKSKWKPKLVTDLEMDHIFVWYDPFLCDTILRRNERKVSFKFYITTYTTSGRELGDLLKIKECGVCPIYYSESQKVLGTGNLDKDLEKELYQEIEHERSVEGYDEGEGIDIQIGNTDTRA 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00979 506 Gene3D Ribonuclease Inhibitor 159 342 IPR032675 -
Vifa3g00979 506 SUPERFAMILY L domain-like 13 252 - -
Vifa3g00979 506 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 142 257 - -
Vifa3g00979 506 Gene3D Ribonuclease Inhibitor 8 158 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00979 Vifa-Chr3 238716579 238718196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00979 93 260 WRKY Transcription Factor Family AT4G12020 28.235 2.47e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00979 - - cam:101489032 661.373