Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00976 ATGTTCTTCTTCTTCTTCCTCTTTCTCACCATCTACATTGTGCCATGTTTATCATATAATGACACACACGCACTTACTCTCTTCCGTCAACAAACTGACACACACGGCCAACTCCTCTCCAACTGGACTGGGCACGACGCATGCTCGGCTGCATGGCACGGTGTTGTTTGCTCCCCAAACAACCGTGTCACCACCCTCGCACTTCATTCCCTCAACCTCCGAGGACCTATAGAAGCTCTATCTCCTCTCACCCATCTTCGCCTCCTCGACCTCCATAACAACCGTCTAAACGGTAACGTTTCAGCTTCTCTTCTCTCCAACTGTACCAATCTTAAACTCCTCTACCTTGCTGGAAACGACTTCTCCGGTCAAATCCCGTCTGAAATATCCTCCTTGATTAACCTCCTCCGTCTCGACCTCTCCGATAACAACCTCGCCGGAGAAATACCCGATGAAATCTCCCATTTGACTAACCTCCTCACTCTGAGGCTTCAGAACAACGCACTCTCCGGTAACATCCCGGATATCTCCTCTGCCATGCCGAATCTCACAGAGCTTAATATGACCAACAACGAATTCTACGGCCAGATACCAAACTCAACGCTAGCAAAATTCAGTGATGAAAGCTTCTCTGGTAACGAAGGTTTATGTGGTTCAAAACCGTTTCAAGTTTGCTCCTCCACGACGAAAAACCCTCCTTCATCTGAACCGGTTCAGACCGTTCCTTCAAACCCGAGTACATTCCCTGAAACAAGTGTTATCGCAAGACCAAGAAGCCAGCACCGCAAAGGGTTAAGCCCTGGCGCAATTGTAGCCATTGTGATAGCAAATTGTGTTGCACTGTTGGTGGTAACATCCTTCGTTGTTGCTCACTGTTGTGCTAAAGGGAGAGGTGTTAATAGTAACTCCATAATGGGTAGTGATAGTGGAAAAAGAAAAAGTTATGGTAGTGAGAAGAAGGTGAGGAATGGTTTTGAGTTGGAGGATTTGTTACGTGCTTCTGCTGAGATGCTTGGGAAGGGAAGTTTAGGAACTGTTTATAGGGCAGTGCTTGATGATGGTAGTACAGTTGCTGTTAAGAGGTTGAAAGATGCAAATCCATGTGCTAGGCATGAGTTTGAGCAGTATATGGATGTGATTGGGAAGCTTAAGCATCCCAATATTGTTAAACTAAGAGCTTATTATTATGCCAAGGAAGAAAAACTTCTTGTCTATGATTATCTCTCCAATGGAAGTTTGCATGCTCTTCTTCATGGGAACCGCGGACCGGGGAGGATTCCGTTGGATTGGACAACAAGAATAAGCTTGGTATTAGGAGCAGCAAGAGGGCTTGCTAGGATTCATACAGAGTATAGTGCAGCAAAAGTGCCTCATGGAAATGTGAAATCATCCAATGTACTACTTGACAAGAACGGTGTTGCTTGTATATCTGATTTTGGACTATCACTGCTGTTAAACTCTGTTCATGCAATTGCAAGACTGGGAGGGTACAGAGCACCTGAACAAACAGAACAAAAGAGACTATCTCAGCAAGCTGATGTATACAGTTTTGGAGTGTTGCTGTTGGAAGTCCTCACAGGGAGAGCACCTTCTTTGCAGTATCCGTCCCCCGGGACTCGTCATCGTAAAGATGAAGAGGAAGAAAATGTGGTGGATCTACCGAAATGGGTTCGATCAGTTGTGAGAGAAGAGTGGACTGGAGAGGTTTTTGATCAAGAACTTCTGAGGTACAAGAATATTGAGGAAGAGCTTGTGTCAATGTTGCATGTTGGTTTAGCTTGTGTGGTGCAGCAGCCAGAGAAGAGGCCAACTATGGTAGATGTTGTTAAGATGATTGAGGATATCAGGGTGGAGCAGTCTCCTCTGTGTGAGGACTATGATGAATCACGCAATTCACTTTCACCTTCCATTCCCACCACTGAAGATGGCCTTGTTTAG 1938 0.4551 MFFFFFLFLTIYIVPCLSYNDTHALTLFRQQTDTHGQLLSNWTGHDACSAAWHGVVCSPNNRVTTLALHSLNLRGPIEALSPLTHLRLLDLHNNRLNGNVSASLLSNCTNLKLLYLAGNDFSGQIPSEISSLINLLRLDLSDNNLAGEIPDEISHLTNLLTLRLQNNALSGNIPDISSAMPNLTELNMTNNEFYGQIPNSTLAKFSDESFSGNEGLCGSKPFQVCSSTTKNPPSSEPVQTVPSNPSTFPETSVIARPRSQHRKGLSPGAIVAIVIANCVALLVVTSFVVAHCCAKGRGVNSNSIMGSDSGKRKSYGSEKKVRNGFELEDLLRASAEMLGKGSLGTVYRAVLDDGSTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNIVKLRAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHTEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNSVHAIARLGGYRAPEQTEQKRLSQQADVYSFGVLLLEVLTGRAPSLQYPSPGTRHRKDEEEENVVDLPKWVRSVVREEWTGEVFDQELLRYKNIEEELVSMLHVGLACVVQQPEKRPTMVDVVKMIEDIRVEQSPLCEDYDESRNSLSPSIPTTEDGLV 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00976 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 617 IPR046959 -
Vifa3g00976 645 Pfam Protein kinase domain 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00976 645 Pfam Leucine rich repeat N-terminal domain 20 58 IPR013210 -
Vifa3g00976 645 SUPERFAMILY L domain-like 18 201 - -
Vifa3g00976 645 Gene3D Transferase(Phosphotransferase) domain 1 408 634 - -
Vifa3g00976 645 MobiDBLite consensus disorder prediction 228 251 - -
Vifa3g00976 645 FunFam Nuclear pore complex protein NUP107 18 175 - -
Vifa3g00976 645 Gene3D Ribonuclease Inhibitor 16 102 IPR032675 -
Vifa3g00976 645 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 408 624 - -
Vifa3g00976 645 MobiDBLite consensus disorder prediction 623 645 - -
Vifa3g00976 645 SUPERFAMILY Protein kinase-like (PK-like) 336 612 IPR011009 -
Vifa3g00976 645 Gene3D Ribonuclease Inhibitor 103 227 IPR032675 -
Vifa3g00976 645 Gene3D Phosphorylase Kinase; domain 1 302 407 - -
Vifa3g00976 645 ProSiteProfiles Protein kinase domain profile. 332 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00976 645 SMART LRR_typ_2 83 107 IPR003591 -
Vifa3g00976 645 SMART LRR_typ_2 180 204 IPR003591 -
Vifa3g00976 645 SMART LRR_typ_2 156 179 IPR003591 -
Vifa3g00976 645 SMART LRR_typ_2 132 155 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00976 Vifa-Chr3 237743149 237745250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00976 17 641 Receptor kinase-like Gene Family AT2G36570 65.099 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa3g00976 Pkinase 1.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00976 - - gmx:102660494 932.169