Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00975 ATGGCATCTTGCGACGACGACGATGATTTCTCTATCCTCCGTGACGATAACCACCACTCTCACCATCTTCACCAAACCTTCGCACCGCATCACCACCATCACCACCACCACCATTTCTCCGCCGCATCAGTCCAATCAAAGCCTATCGCCGACGATGATACCGATGATTACGGAAATCCGTTCGATGATGACGCCGGTAGCGAGAAACGTAAAGATCGAGATCGAGATGAGATCGGTGACGGAACGACGTCGTACGGGTTTAACAAGAGGCCGAAACCAGCTTCTAGCGGAAACGGAAACGGTGGAGTAGGAGCAGAGTATAGGAAGGATCGAGAAGAGTGGAGCGATACAGCGATTGTTTGCTTGCTGGAAGCGTATACTGAGAAGTTCACGCAGCTGAATCGGGGGAATCTGAGGGGGAGAGATTGGGAGGAGGTAGCGTCGGTGGTGAGTGAACGCTGTGAGAATCAATCCAAGAGTGTGGAGCAGTGTAAGAACAAGGTTGATAACCTGAAGAAACGGTATAAGCTGGAAAGACACAGAATGAACAATGGCTGCATCTCCGCCAGTCACTGGCCTTGGTTCAAGCAGATGGAGAATATCGTCGGGAATTCTCTACCTTCGAAGTTTGCGGATGAGGATAAAGCCATTGTTCCTGCTTCCAATTCTCCTAGGCAGTCCAAGAGATATGGAATGGCAACATCCAGCAGTGGAGGTCAAGTAAACAGCCTGAAGTCCAAAGCATTGACAAACCTTAGATGGCGGAGAGTTGTTCTAAAAATTAGTGGATCAGCACTTACTGGATCCGATACCTGCAATATTGACCCTAAGGTGGCCATGTTAGTTTCAAGTGAAGTTGCAATAGCTTCCCGCCTTGGTGTCGAGATAGCAATTGTTGTTGGAGGTCGTAATTTCTTCTGTGGAGACGCATGGGTAACTGCTACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGGATGATGGCTACTGTGATGAATTCGTTACTGCTCCAATCAACCCTCGAGAAGATGGGAGTTCAGACTCGTGTTCAAACTTCAGTTTCAATGCAGGAGTTTGCTGAACCATACAATAGGCAACGGGCAATCAGGCATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCAATCCACTTTTCTCAACTGACATAGCTGCTGCTCTTCGGGCCTCAGAAGTTAATGCTCAGGCAGTCCTCAAAGCTACTAACGTAGATGGTGTATATGACTGCAGCTCCCGAGACACCAATTTCACTTTTGAACACATATCCTTCAGAGAGCTAGTGTCTAGAGGTGTCACCTCTATGGATATGTCAGCCTTGACATTCTGTGAGGAAAATGCCATTCCTGTTGTAGTTTTTAATCTATTGGCCCCTGGGAACATCTCAAAAGCTTTATGTGGAGAACAAGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA 1482 0.471 MASCDDDDDFSILRDDNHHSHHLHQTFAPHHHHHHHHHFSAASVQSKPIADDDTDDYGNPFDDDAGSEKRKDRDRDEIGDGTTSYGFNKRPKPASSGNGNGGVGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISASHWPWFKQMENIVGNSLPSKFADEDKAIVPASNSPRQSKRYGMATSSSGGQVNSLKSKALTNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSSEVAIASRLGVEIAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSTLEKMGVQTRVQTSVSMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDIAAALRASEVNAQAVLKATNVDGVYDCSSRDTNFTFEHISFRELVSRGVTSMDMSALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00975 493 Gene3D - 249 487 IPR036393 -
Vifa3g00975 493 Hamap Uridylate kinase [pyrH]. 252 487 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vifa3g00975 493 MobiDBLite consensus disorder prediction 26 106 - -
Vifa3g00975 493 Pfam Myb/SANT-like DNA-binding domain 111 201 IPR044822 -
Vifa3g00975 493 SUPERFAMILY Carbamate kinase-like 253 486 IPR036393 -
Vifa3g00975 493 MobiDBLite consensus disorder prediction 62 80 - -
Vifa3g00975 493 Gene3D - 114 177 - -
Vifa3g00975 493 CDD AAK_UMPK-PyrH-Ec 255 487 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vifa3g00975 493 FunFam Uridylate kinase isoform A 246 492 - -
Vifa3g00975 493 Coils Coil 154 181 - -
Vifa3g00975 493 Pfam Amino acid kinase family 256 466 IPR001048 -
Vifa3g00975 493 PANTHER URIDYLATE KINASE 107 492 - -
Vifa3g00975 493 MobiDBLite consensus disorder prediction 26 41 - -
Vifa3g00975 493 FunFam Aspartate/glutamate/uridylate kinase family protein 114 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00975 Vifa-Chr3 237737578 237741895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00975 95 205 Trihelix Transcription Factor Family AT3G14180 38.053 2.14e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa3g00975 AA_kinase 5.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00975 - - gmx:100805176 795.038