Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00973 ATGGATGCTAATGGAATGTTTTCTCCTATCACTACTTCTGGTTTTGTAGGAGTTGTTGATAATAATAACTCTTTACAACAACAACAACAACAACAACAACAGAATCTCTCTATTCAACAACAAAATCCCCACCATTTGCACCTTTCCCAAGGTGTTTCCTATGCTCCCCATCCTCATGACACTGACACACATCATCAACAACATCAACAACAACAACAACAACAGTTGCATCAATCAATGAAACATGGGTACCCTCCTTTTTCTTCATCCAGGAACAAACAACAACAGCAGCAGCAGCAGCAAGGTTCTCAGGTGAGTGATGAGATTGAGGATGAGCCAAGTTTTCAAGCTGATGAAACCTCTGGTGGTGGTGATCCAAAGAGGAAATTTTCGCCTTGGCAAAGAATGAAATGGACTGATACAATGGTGAGGCTTTTGATAATGGCGGTTTATTACATTGGGGATGAAGGTGGTTCTGAAGGGACTGATCCAATGGGTAATAAGAAGAAAGCAAGTGGGTTGTTACAGAAGAAAGGGAAATGGAAATCTGTTTCAAGGGCTATGATGGAGAAAGGGTTTTATGTCTCACCTCAACAATGTGAAGATAAGTTCAATGATTTGAATAAAAGGTATAAGAGGGTGAATGATATACTTGGAAAAGGGACAGCTTGTAGGGTTGTGGAGAATCAGAATTTGATGGATTCAATGGATTTGACACCTAAGATGAAAGATGAAGTTAGGAAGTTGCTGAATTCTAAGCATCTTTTCTTTAGGGAAATGTGTGCTTATCATAATAGTTGTGGTCATGCTGGTGGTGGTTCTAATGTTCAACTTCAGCAAGTAGAAGGTGGAAGTGGACCAACAACACCTCTGAATCAACCTCAACAACATCAACAGCAGCCGCATCAACAACCATGTTTCCATTCAACAGAAAATGGTGTTGGGAATTTGAGTGGTTCGGGTTTGAGGATTTTGAAAATAGGAAGCGGAGAGGCTGAAGAGGAGGATGATGAAGATGAAGACGATGAATCAGAGGACTTTTCTGATGAGGATGAAGATGAATCGGGAGAAGGTGGTTCAAAGTGTCAAATTGGTCATTCAAATGATCAAGATGAAGATGAGAATGACGGAAAACCATCGCGGAAAAGGCGAAGAAAAGGAGGATTTCCCGTTTCCATGTCATCCTCATCATTACCATTGATGAATCAAATGAACAATGAAATAAGTGGCGTCTTTCAAGATGGCGGCAAGAGTCCATGGGAGAAAAAGCAATGGATAAGAAACAGAATTTTGCAGCTGGAGGAACAGAAAATAAGCTATGAATCACAAGCTTTTGAGTTGGAAAAACAAAGGCTGAAATGGGCAAGGTATAGTAGCAAGAAAGAGAGGGAAATGAAGAGAGCAAAACTTGAAAATGAAAGGAGGAGATTAGAAAATGAAAGAATGGTTTTGCTTATTAGGAAGAAGGAGATTGAGTTGATGAATATTCAACAGCAACAGCATCAACAACAGCAACATTCTTCTACTTAG 1530 0.3993 MDANGMFSPITTSGFVGVVDNNNSLQQQQQQQQQNLSIQQQNPHHLHLSQGVSYAPHPHDTDTHHQQHQQQQQQQLHQSMKHGYPPFSSSRNKQQQQQQQQGSQVSDEIEDEPSFQADETSGGGDPKRKFSPWQRMKWTDTMVRLLIMAVYYIGDEGGSEGTDPMGNKKKASGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQNLMDSMDLTPKMKDEVRKLLNSKHLFFREMCAYHNSCGHAGGGSNVQLQQVEGGSGPTTPLNQPQQHQQQPHQQPCFHSTENGVGNLSGSGLRILKIGSGEAEEEDDEDEDDESEDFSDEDEDESGEGGSKCQIGHSNDQDEDENDGKPSRKRRRKGGFPVSMSSSSLPLMNQMNNEISGVFQDGGKSPWEKKQWIRNRILQLEEQKISYESQAFELEKQRLKWARYSSKKEREMKRAKLENERRRLENERMVLLIRKKEIELMNIQQQQHQQQQHSST 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00973 509 Gene3D - 138 213 - -
Vifa3g00973 509 MobiDBLite consensus disorder prediction 26 48 - -
Vifa3g00973 509 Coils Coil 430 450 - -
Vifa3g00973 509 MobiDBLite consensus disorder prediction 366 381 - -
Vifa3g00973 509 MobiDBLite consensus disorder prediction 331 356 - -
Vifa3g00973 509 Coils Coil 460 487 - -
Vifa3g00973 509 PANTHER F16F4.11 PROTEIN-RELATED 17 498 - -
Vifa3g00973 509 MobiDBLite consensus disorder prediction 274 400 - -
Vifa3g00973 509 MobiDBLite consensus disorder prediction 26 132 - -
Vifa3g00973 509 Pfam Myb/SANT-like DNA-binding domain 135 262 IPR044822 -
Vifa3g00973 509 Coils Coil 22 42 - -
Vifa3g00973 509 MobiDBLite consensus disorder prediction 67 110 - -
Vifa3g00973 509 MobiDBLite consensus disorder prediction 274 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00973 Vifa-Chr3 237712755 237714284 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa3g00973 Myb_DNA-bind_4 1.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00973 - - tpra:123902711 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00973 3 237712755 237714284 Vifa3g00973 3 237712755 237714284 ECH
Vifa5g03148 5 1043188632 1043189954 Vifa3g00973 3 237712755 237714284 PCT