Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00972 ATGGATTGGAATGGAAACACAAAAAGCTTTCTTCCTCAACATGCAGATTCTTCCTTAAGCTTCCTCTACAACTACAACTACAACTACAACCAAACCTCATATCAAGGGATGGAAGTGAAACAGCGAGATTGGATAGAAACATTTCCAGAAATGGACAAAATGATGATGAAATACGGCAACCAGGAAAAGAAAAAGAGATTAACTAGTGAACAGATGGAATCGCTTGAGAGAAGTTTTCAGATGGAGATAAAGTTAGATCCTCACAGGAAGATGAAGCTTTCCAAAGAATTAGGGCTTCAGCCTCGGCAAATTGCTATTTGGTTCCAAAATAGGCGTGCGAGGTGGAAGACAAAGCAACTTGAACACTTGTATGATTCACTTAAACACCAGTTTGAGGTTGTTTCCAAGGAAAAACAACAGCTTCAAGATGAGGTTTTGAAGTTGAAGGGAATGTTGAAAGAGCAAGGGTGTTGTTCTGGTAGAGTGCAAGGTTATTATACAGAAGTGTCAGTGGAAGAAACAGAAACAGTGGAAAGCACATCAGAGGGGAAGGGAAAGATTCATCATGAGTTCAACATTGGAGAGGGAAACTGTTGTTTCACTATAGAGGATTATAACATTCATAACAGTACAGTTGTGCCACTATTGCCTTACTGGCCTTCAGTTCCTTATAGCTATCAACCCTGA 687 0.3988 MDWNGNTKSFLPQHADSSLSFLYNYNYNYNQTSYQGMEVKQRDWIETFPEMDKMMMKYGNQEKKKRLTSEQMESLERSFQMEIKLDPHRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLEHLYDSLKHQFEVVSKEKQQLQDEVLKLKGMLKEQGCCSGRVQGYYTEVSVEETETVESTSEGKGKIHHEFNIGEGNCCFTIEDYNIHNSTVVPLLPYWPSVPYSYQP 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00972 228 Pfam Homeodomain 63 116 IPR001356 GO:0003677
Vifa3g00972 228 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Vifa3g00972 228 SMART HOX_1 61 122 IPR001356 GO:0003677
Vifa3g00972 228 Coils Coil 124 144 - -
Vifa3g00972 228 CDD homeodomain 63 119 IPR001356 GO:0003677
Vifa3g00972 228 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Vifa3g00972 228 Gene3D - 56 126 - -
Vifa3g00972 228 FunFam Putative homeobox-leucine zipper protein ATHB-51 60 123 - -
Vifa3g00972 228 Pfam Homeobox associated leucine zipper 118 152 IPR003106 GO:0006355|GO:0043565
Vifa3g00972 228 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Vifa3g00972 228 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Vifa3g00972 228 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 154 IPR045224 GO:0003700
Vifa3g00972 228 SUPERFAMILY Homeodomain-like 53 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00972 Vifa-Chr3 236993688 236994874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00972 1 148 Homeobox Transcription Factor Family AT5G03790 52.147 5.49e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa3g00972 Homeodomain 9.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00972 - - gmx:100778007 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00972 3 236993688 236994874 Vifa3g00972 3 236993688 236994874 ECH
Vifa3g00972 3 236993688 236994874 Vifa5g03137 5 1039910095 1039912230 PCT