Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00970 ATGGTTCTCAAGACCGAGCTGTGCCGTTTCAGTGGTGCCAAGATCTATCCTGGGAGAGGAATCAGATTTATCCGGAGTGATTCACAGGTTTTCCTTTTCGTCAATTCGAAATGCAAAAGGTACTTCCATAACAAGTTGAAGCCATCTAAGCTTACCTGGACTGCCATGTACCGGAAGCAACATAAGAAGGACATTGCACAAGAAGCTGCGAAGAAGAGGCGTAGAGCTACCAAGAAGCCTTACTCAAGGTCTATTGTTGGTGCTACTTTGGAAGTTATTCAGAAGAAGAGATCAGAGAAGCCAGAGGTTCGCGATGCTGCCAGAGAAGCTGCTCTTCGTGAAATTAAGGAGAGGGTGAAGAAAACTAAGGATGAAAAGAAAGCAAAGAAGGCAGAAAGTCAAGCTAAGGCACAAAAGACCGGAGGAAAAGGAAATGTTACCAAGGGTGCTGCATCAAAAGGTCCTAAGCTTGGTGGTGGAGGCGGGAAGCGCTGA 495 0.4626 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAAKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERVKKTKDEKKAKKAESQAKAQKTGGKGNVTKGAASKGPKLGGGGGKR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00970 164 MobiDBLite consensus disorder prediction 117 136 - -
Vifa3g00970 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Vifa3g00970 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 156 IPR000988 -
Vifa3g00970 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Vifa3g00970 164 FunFam 60S ribosomal protein L24 3 64 - -
Vifa3g00970 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Vifa3g00970 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Vifa3g00970 164 Gene3D - 69 139 - -
Vifa3g00970 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Vifa3g00970 164 MobiDBLite consensus disorder prediction 117 164 - -
Vifa3g00970 164 MobiDBLite consensus disorder prediction 64 83 - -
Vifa3g00970 164 Coils Coil 112 136 - -
Vifa3g00970 164 SMART 4TRASH 8 46 IPR011017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00970 Vifa-Chr3 236622922 236623989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00970 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 85.350 1.72e-87 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00970 K02896 - sly:101266177 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00970 3 236622922 236623989 Vifa3g00970 3 236622922 236623989 ECH
Vifa5g03135 5 1039885816 1039887929 Vifa3g00970 3 236622922 236623989 PCT