Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00960 ATGGAACTCTCTCTTCTCACCCATCAGCACAATCCTTTCCTCGCCTCCAATCTCTTCACAATTGCTGGAGTCTATGCATGTGATGTGGCGGAAGCTGTTAGCACTAGTAGAAGAGCGCTAAGAGGAGCTAAAATTCCTGAGAGTGATTTCAAAACCTTGCCAAATGGTTTGAAGTACTATGATTTGAAGGTTGGAAATGGAGCTGAAGCTGTGAAAGGATCGCGTGTCGCAATTCACTATGTTGCTAAATGGAGGGGAATCACATTTATGACTAGTAGACAAGGAATGGGCGTTGGAGGAGGAACGCCCTATGGATTTGATGTAGGCGAATCTGAGCGAGGAAATGTCCTAAAAGGTTTGGATTTAGGAGTAGAAGGCATGCGAGTTGGAGGCCAGAGGCTGTTAATTGTTCCTCCTGAACTTGCCTATGGAAGCAAGGGAGTTCAAGAAATTCCTCCAAATGCAATAATAGAGGTGGATGTTGAATTGCTTGCCATTAAACAAAGCCCATTTGGGACTGCTGTAAAGATTGTAGAAGGCTAA 543 0.4438 MELSLLTHQHNPFLASNLFTIAGVYACDVAEAVSTSRRALRGAKIPESDFKTLPNGLKYYDLKVGNGAEAVKGSRVAIHYVAKWRGITFMTSRQGMGVGGGTPYGFDVGESERGNVLKGLDLGVEGMRVGGQRLLIVPPELAYGSKGVQEIPPNAIIEVDVELLAIKQSPFGTAVKIVEG 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00960 180 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 46 175 - -
Vifa3g00960 180 SUPERFAMILY FKBP-like 35 167 - -
Vifa3g00960 180 Gene3D - 29 174 IPR046357 GO:0003755
Vifa3g00960 180 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 73 167 IPR001179 GO:0003755
Vifa3g00960 180 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 69 164 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00960 Vifa-Chr3 233899069 233900709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00960 73 165 Calmodulin-binding Proteins AT5G48570 42.105 5.46e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00960 - - jre:109008466 302.753