Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00957 ATGACGGATTCCGTGACTGAAACGGTGCTAGCTCCGGTGGCATCACTTTTCGTCGGCGATCTTCACTCCGACGTAACCGACGCTCACCTCCATGCGACATTTTCCGAATTCAACAGCCTCGTTTCCGTTCACGTCTGTAAAGACGCCGCCACTGGGAAGTCCCTCTGTTACGGTTACGTCAACCTCTCCTCTCGTCAAGAAGCAATTTCTGCTATCGAGTTGAAGAATCAATCTTTGCTCAATGGAAAAGTGATAAGGGTCATGTGGTCAAGTTGCGATGTAAGGAAATGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGGAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATCTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATACAGTTTGATTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAACGCTCTTTGCCTGAACCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACAGAAGCACTTCTTAAAGAAAAGTTCTCATCTTTTGGAAAAATTCTTAGCTTGGCTATTGTAAAGGATGAGAAGGGGTTGTCAAAAGGTTTTGGATTTATGAACTATGAAAACCCGGATGATGCAAGACGAGCAACGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACCTGTATGTTGCAAGAGCACAAAAAAAGGTTGAACGTGAGAAGATCTTGCATCAGTGGTTTGCGGAAAGATGCATGGAGAAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGACGAAGAACTAAAGAGTCAGTTTAGTGCTTGTGGCACAATAACTTCTGCAAAAGTTATGAGAGATGACAAAGGAAAAAGCAAAGGCTTTGGGTTTGTCTGTTTCTCTACCCTGGATGAGGCTGTTAAGGCTGTGAACAGTTTTCATGGACGCATGTTTCACGGAAAACCACTGTATGTTGCTTTTGCTCAGAGGAAAGATGTTAGGCAAAGCCTATTGCAGCTCCAGCATACTCAAAAACCAGCAGGATTAGCTGGACCTTCCACTGCTGTTATCCCCGGTGCACTTTCTCCTATCATTCACACTGGTGTTGTTTATCATCACCCTAAGGGTTCTACAACATTTTATCATCATTCATCGGGTTCTATTATTTCCAACAAAACTACTATGCAGCAATGGAAAAACATGAGCTGGATGGTTGGCAATGCAGATTCAAAAGATTCAAGTACTCATTCAGGACAAGCCAAACATGTGGCCAGTGGATGGAAGCAGGAGATGGAAGAAAAATCTGGAATTTCATCTGCCATGCAGTTTCTTGATCAGAAGGGCCATGTTTCTGACCAGGACGTACTTTGTTCAGATTCTATTTCAGCCGAGTTTTCTGTCATCTGA 1530 0.415 MTDSVTETVLAPVASLFVGDLHSDVTDAHLHATFSEFNSLVSVHVCKDAATGKSLCYGYVNLSSRQEAISAIELKNQSLLNGKVIRVMWSSCDVRKCGKGNVFVKNLAESIDNVGLHDLFQEYGNILSSKIVISEDGKSKGFGYIQFDSEESANDAIQKMNGSTVRDKQIYVGKFIRKSERSLPEPDAKYTNLYVKNLDPDITEALLKEKFSSFGKILSLAIVKDEKGLSKGFGFMNYENPDDARRATEAMNGSQFGSKNLYVARAQKKVEREKILHQWFAERCMEKNLKYKGSNIYVKNIDDSVSDEELKSQFSACGTITSAKVMRDDKGKSKGFGFVCFSTLDEAVKAVNSFHGRMFHGKPLYVAFAQRKDVRQSLLQLQHTQKPAGLAGPSTAVIPGALSPIIHTGVVYHHPKGSTTFYHHSSGSIISNKTTMQQWKNMSWMVGNADSKDSSTHSGQAKHVASGWKQEMEEKSGISSAMQFLDQKGHVSDQDVLCSDSISAEFSVI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00957 509 FunFam Polyadenylate-binding protein 94 181 - -
Vifa3g00957 509 SMART rrm2_1 192 264 IPR003954 GO:0003676
Vifa3g00957 509 SMART rrm2_1 295 367 IPR003954 GO:0003676
Vifa3g00957 509 SMART rrm2_1 101 173 IPR003954 GO:0003676
Vifa3g00957 509 PANTHER RNA BINDING PROTEIN 291 446 - -
Vifa3g00957 509 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 14 467 IPR006515 GO:0003723
Vifa3g00957 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Vifa3g00957 509 Gene3D - 281 380 IPR012677 -
Vifa3g00957 509 Gene3D - 182 278 IPR012677 -
Vifa3g00957 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Vifa3g00957 509 CDD RRM4_I_PABPs 293 371 - -
Vifa3g00957 509 SUPERFAMILY RNA-binding domain, RBD 14 180 IPR035979 GO:0003676
Vifa3g00957 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Vifa3g00957 509 SMART rrm1_1 192 264 IPR000504 GO:0003723
Vifa3g00957 509 SMART rrm1_1 295 367 IPR000504 GO:0003723
Vifa3g00957 509 SMART rrm1_1 15 88 IPR000504 GO:0003723
Vifa3g00957 509 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vifa3g00957 509 SUPERFAMILY RNA-binding domain, RBD 190 374 IPR035979 GO:0003676
Vifa3g00957 509 Gene3D - 6 96 IPR012677 -
Vifa3g00957 509 FunFam Polyadenylate-binding protein 182 276 - -
Vifa3g00957 509 Gene3D - 100 181 IPR012677 -
Vifa3g00957 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Vifa3g00957 509 FunFam Poly(A) binding protein cytoplasmic 1 like 286 375 - -
Vifa3g00957 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Vifa3g00957 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Vifa3g00957 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Vifa3g00957 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00957 Vifa-Chr3 233112693 233115632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00957 3 460 Eukaryotic Initiation Factors Gene Family AT2G36660 52.677 2.51e-168 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00957 K13126 - gmx:100804671 583.948