Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00954 ATGGCAGAATCGTCTACCACCTCTCCTCCACCGGCGACTAAAAGCTGGGCCGATCAAGCAGACGAAGAAACCATCCCATCCCCAAGCTCCACCGCCGAAACACCTACCCTCAACGTCGATGGATTAACCATCGACGAAGACAAGAAGTCTTCCGCTAAGTTCTTAGACGATCCCGATGACTCCAACATCCAAGCGGTTACTTCCGGCGACACTCCTTACACGTCGGCGGCGACATTCGAAGAGTTGTCTTTATCGGCGGAGCTTCTGAAGGGACTATATGTAGAGATGAAGTTTCAAAAGCCTAGCAAAATTCAAGCAGTGAGCTTGCCGATGATCCTCAATCCTCCTAATAGGGATTTGATCGCGCAAGCACATAATGGTTCAGGGAAAACCACTTGTTTTGTTCTTGGGATGCTTAGTCGTGTTGATCCGACTTTGCAAGCTCCTCAAGCTCTTTGCATTTGTCCCACTAGAGAGTTAGCTATTCAGAACATTGAAGTTCTCCGGAAGATGGGGAAGTACACAGGGATTAGCTCAGAATGTGCAGTTCCTATGGACAGAAGGGATTCGATTCCAATTTCCAAAAGGTCGCCTATTATGGCTCAGATTGTTATTGGTACTCCAGGCACGATTAAGAATTTGATGACTTACAAGAAACTTGGGGTGACAAAATTGAAGATTCTCGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTCAAAGACGACTCATTGAGGATAATGAAAGAAATAGAAAAGTTAAATTCAAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACGTTGTCAAGAGTTTTGTTACAAGGATTGTTGAGAAGAAGGAGCATAATAAGCTTTTCGTGAAGAAAGAGGAACTATCTTTAGATGCAGTGAAGCAGTACAAAGTTTGTGTTCCTGATGAACTTGCTAAGATTGAAGTGATTAAGAGTTATATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACTAGAAATAGTGCAAAAATGTTGCATAAAGCCCTTGTTGATTTAGGCTATGAAGTTACTTCCATACAAGGCGCTCTTGAACACGATGAGAGAGACAAGATAGTCAAGGAGTTTAAAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATCTGGTTATCAACTATGATCTTCCGTTGAAGTATGCTGCTGAGTACACCCGTGGCCGTGAACTCGAGCCTGATTATGAGGTCTATTTGCACAGGGTTGGTAGGGCCGGGCGATTTGGGCGAAAGGGTGCTGTATTTAACTTGATATGTGACGAAAGGGATGAGAGACTGATGTCGAAGATTGAAAACCATTTTGGAACCCATGTAACAGAGGTGCGAGAAAGAAGTGTGGAAGATTATAAAGCTGCTCTAAAGGAAGCTGGTTTACTGATTTGA 1470 0.4306 MAESSTTSPPPATKSWADQADEETIPSPSSTAETPTLNVDGLTIDEDKKSSAKFLDDPDDSNIQAVTSGDTPYTSAATFEELSLSAELLKGLYVEMKFQKPSKIQAVSLPMILNPPNRDLIAQAHNGSGKTTCFVLGMLSRVDPTLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDRRDSIPISKRSPIMAQIVIGTPGTIKNLMTYKKLGVTKLKILVFDEADQMLAEDGFKDDSLRIMKEIEKLNSNCQVLLFSATFNDVVKSFVTRIVEKKEHNKLFVKKEELSLDAVKQYKVCVPDELAKIEVIKSYIFEIGENVGQTIIFVRTRNSAKMLHKALVDLGYEVTSIQGALEHDERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPLKYAAEYTRGRELEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDERLMSKIENHFGTHVTEVRERSVEDYKAALKEAGLLI 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00954 489 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 106 IPR014014 GO:0003724
Vifa3g00954 489 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 456 - -
Vifa3g00954 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 456 IPR027417 -
Vifa3g00954 489 CDD DEADc_DDX19_DDX25 84 281 - -
Vifa3g00954 489 SMART helicmild6 343 438 IPR001650 -
Vifa3g00954 489 CDD SF2_C_DEAD 301 447 - -
Vifa3g00954 489 Gene3D - 294 486 IPR027417 -
Vifa3g00954 489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 287 IPR014001 -
Vifa3g00954 489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 479 IPR001650 -
Vifa3g00954 489 MobiDBLite consensus disorder prediction 1 38 - -
Vifa3g00954 489 SMART ultradead3 97 304 IPR014001 -
Vifa3g00954 489 MobiDBLite consensus disorder prediction 1 43 - -
Vifa3g00954 489 Pfam DEAD/DEAH box helicase 103 274 IPR011545 GO:0003676|GO:0005524
Vifa3g00954 489 Gene3D - 56 293 IPR027417 -
Vifa3g00954 489 Pfam Helicase conserved C-terminal domain 314 438 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00954 Vifa-Chr3 232839767 232847487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00954 78 470 Eukaryotic Initiation Factors Gene Family AT1G72730 36.181 1.29e-69 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00954 K18655 - gmx:100778091 758.059