Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00952 ATGCCCTGGAAAAAGTTGCAGGTCGAAGATATTATCAAGGTGATGATGAATTCAATGAATGTTCCTTCCAAAAGAAGTACACTGGAGAGGAAACTTGACAAGCTCATACTCGCTCTCTTTGCAACACTCTTTATGATGTGTTTCATTGGAGCCATAGGCAGCGCTATTTTTGTGAACAAAAAATACTTCTATTTACATCTTGATTCATCAGAGGAGGGCTCAGCACAGTTCAATCCAAAAAACAGATTTCTGGTTTTTATCCTGACTATGTTTACCCTTATCACACTGTATTCAACAATCATCCCAATTTCACTTTATGTGTCTATAGAGATGATAAAATTTATTCAATCAACTCAATTTATCAACAAGGATTTGGGAATGTACCACAATGAAACTAATACACCGGCACTGGCCAGAACTTCAAATCTGAATGAAGAACTTGGACAGGTGGAATACATTTTCTCTGACAAAACTGGGACCCTAACAAGAAACTTAATGGAGTTCTTCAAGTGTTCGATAGGAGTAGAGGTCTATGGAAATGGTGTGACTGAAATTGAGAGAGGACTAGCAGAGCGCAATGGCATGAAAATTGAGGAAAATAGACTGCCCCATACTGTGCATGAGAAGGGTTTCAATTTTGAAGATGCCAGGCTTATGAGAGGAGCTTGGAGGAATGAACCCAATCCTGATGCCTGCAGACAATGTATCAATGAAGATGTTGAAAATGACGATATAAATGATGAAATTCAAGAGGACGACATAAATGATAAAATTCAAGAGGACGACCTAAATGATAAAATCCAAGAGGACGACGTAGATGATGAATTTCAAGAGGACGACATAGATCTAGATGATGAATTTCAAGAGGAGGATATAGATGGTGAATTTCAAGAGGACGGCGTAGATGAAGAATTTATGGAGGATGACATATCTAACGAATTTCAAGAGGACGATCTGGATGCTTTACTCCTAGAAGACAAACTTGAATGA 990 0.3828 MPWKKLQVEDIIKVMMNSMNVPSKRSTLERKLDKLILALFATLFMMCFIGAIGSAIFVNKKYFYLHLDSSEEGSAQFNPKNRFLVFILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLGMYHNETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGVEVYGNGVTEIERGLAERNGMKIEENRLPHTVHEKGFNFEDARLMRGAWRNEPNPDACRQCINEDVENDDINDEIQEDDINDKIQEDDLNDKIQEDDVDDEFQEDDIDLDDEFQEEDIDGEFQEDGVDEEFMEDDISNEFQEDDLDALLLEDKLE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00952 329 Gene3D - 20 150 - -
Vifa3g00952 329 FunFam Phospholipid-transporting ATPase IC 151 163 - -
Vifa3g00952 329 Gene3D - 151 163 IPR023214 -
Vifa3g00952 329 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 13 236 - -
Vifa3g00952 329 Gene3D - 164 180 IPR023299 GO:0000166
Vifa3g00952 329 SUPERFAMILY Calcium ATPase, transmembrane domain M 12 148 IPR023298 -
Vifa3g00952 329 ProSitePatterns E1-E2 ATPases phosphorylation site. 156 162 IPR018303 -
Vifa3g00952 329 SUPERFAMILY HAD-like 142 237 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00952 Vifa-Chr3 232550965 232566169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00952 13 234 Primary Pumps ATPases AT1G59820 68.161 3.87e-99 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00952 K14802 - gmx:100815547 420.624