Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00949 ATGTTGGTTCCTCCATGGCTCAAACCACTTCTCAACACACCGTTCTTCAATGTCTGCCCGATTCACCGCGACGCTGCGAGAAGCGAATGTAACATGTTTTGTTTGGATTGTAACGTTGACGCCTTTTGCTTCTACTGTCGTTCTTCCAAACACAAAGATCATCAAGTCATTCAGATTAGGAGATCTTCGTATCACGATGTAGTGAGAGTCGGTGAAATTCATAAAATGTTGGATATTACTGGAGTTCAAACGTATGTCATTAATAGTGCTAGAGTTTTGTTCCTGAATCAAAGGCCACAACCAAAATCTGGAAAAACAGGAGCTTATATTTGTGAGATTTGTGGAAGAAGTCTCTTAGACCATGTTCGTTTCTGTTCTTTGGGATGTAAGCTTGTAGGAATAAAGAGAAATGGGAATGCAAGCTTTGTTTTAGATGCTAATAACAATGGAGTATCAACAATGGGAGAAGGGATGTCAAGAAGATCAATCTCTTCGAGACAAGAAGAAGAAGAATTGCATGAAGGCTCGCAACAAGACATGTATCAAGTGACACCTCCTTCAAATGCAAGAAGAAGAAAAGGAATACCTCATAGAGCTCCTTTTGGATCCTAA 612 0.4003 MLVPPWLKPLLNTPFFNVCPIHRDAARSECNMFCLDCNVDAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIHKMLDITGVQTYVINSARVLFLNQRPQPKSGKTGAYICEICGRSLLDHVRFCSLGCKLVGIKRNGNASFVLDANNNGVSTMGEGMSRRSISSRQEEEELHEGSQQDMYQVTPPSNARRRKGIPHRAPFGS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00949 203 CDD Bbox2 18 59 - -
Vifa3g00949 203 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 201 - -
Vifa3g00949 203 SMART bboxneu5 14 59 IPR000315 GO:0008270
Vifa3g00949 203 MobiDBLite consensus disorder prediction 162 176 - -
Vifa3g00949 203 MobiDBLite consensus disorder prediction 151 203 - -
Vifa3g00949 203 Pfam PLATZ transcription factor 60 131 IPR006734 -
Vifa3g00949 203 SUPERFAMILY B-box zinc-binding domain 16 61 - -
Vifa3g00949 203 Gene3D Classic Zinc Finger 17 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00949 Vifa-Chr3 231866683 231867812 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vifa3g00949 PLATZ 7.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00949 - - gmx:100809455 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03115 5 1033486639 1033488543 Vifa3g00949 3 231866683 231867812 PCT