Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00946 ATGCCATGTTCACTCCCTCTCTCTCATCTTTCTCTCTCCTCCCTCTCCAAAACCCCACTCACCTCTTCCCCCTCCCCTAAAAAACCTTATCCACTTCACCACCGTCTCTCCATCAAATCCTCAACCAACAAAACCCCAGAAACGACAACCAAAACCAGTTCATGGGTAAGTCCAGATTGGCTCACTTCACTCTCCAAGTCTCTAACCACAGCAAAAGATGATTCTGGCATTCCTGTAGCTAGTGCTAAGCTTGATGATGTTTCTGATCTTTTGGGTGGTGCTCTTTTTCTTCCTTTGTTTAAGTGGATGAATGAGTATGGTCCTGTTTATCGGTTGGCTGCTGGTCCGAGGAATTTTGTTGTTGTTAGTGATCCTGCTGTTGCGAAACATGTGCTTAAGAATTATGGGAAATATGGGAAAGGTCTTGTCGCTGAGGTCTCTGAGTTTTTGTTTGGCTCTGGTTTTGCTATTGCTGAAGGGCCTCTTTGGACGGCAAGACGCAGGGCTGTCGTTCCATCACTTCACAAACGATACTTGTCGATTATGGTAGATAGAGTGTTCAGTAGATGTGCTGAGAGATTAGTAGAGAAGCTACAACCTGATGCAATTAATGGAACTGCTGTTAACATGGAGGACAAGTTTTCCCAGTTGACCCTTGATGTTATCGGTTTATCTGTATTCAACTATAACTTTGATGCACTGAATTCAGACAGTCCTGTTATTGAAGCTGTTTACACTTCACTGAAAGAAGCAGAGGCTCGGTCAACCGATCTTTTACCGTACTGGAAGGAAAGTTCTTTTCTCATCTCCCTTTTGTGCTATGGAATTTGGATTTTCTTTCTGTGTTTGTCAATTTTCACGCCTTTTATTTCTCGTTCTTTGTTGCTGCAGATTGGTTTTCTTTGTAAGATAATACCGAGACAGATAAAGGCTGAAAAGGCTGTTAGTGTTATTAGGGAAACCGTAGAAGATCTTATTGCGAAATGTAAAGAGATTGTAGAGTCTGAGGGTGAAAGAATCGATGCTGATGAATATGTGAACGATGCTGATCCTAGTATTCTCCGGTTTTTGCTTGCCAGCAGAGAAGAGGTTTCAAGTGTGCAATTAAGGGATGATCTTTTGTCAATGTTAGTTGCCGGTCACGAGACCACTGGTTCGGTGCTTACTTGGACACTTTATCTTCTAAGTAAGGATTCTTCCTCATTAGCAAAAGCACAAGAAGAGATAGACAGAGTTTTACAGGGAAGGCGTCCTTCCTATGAAAATATTAAAGATCTTAAGTTCTTGACGCGCTGTATTATGGAGTCACTCCGACTTTATCCACATCCTCCCGTATTGATCAGAAGATCTCAAGTTCCCGATGAGCTTCCTGGTGATTACAAAATCAATGCTAGTCAAGATATTATGATTTCGGTATACAACATACATCGTTCTTCTAAGGTTTGGGATAGGGCCGAAGAGTTTTTGCCGGAAAGATTTGATTTGGATGGTCCAGTGCCAAATGAAACAAATACAGATTTCAGATTCATTCCGTTTAGCGGAGGGCCTCGAAAGTGTGTCGGTGATCAGTTTGCTTTATTGGAAGCTATCGTTGCTCTTGCGGTCTTTCTACAGCACATGAACTTTGAGCTCGTCCCTGATCAGAATATCGGCATGACTACCGGAGCGACAATACATACAACAAATGGCTTGTATATGAAACTGAGCCAACGGTTGAAATAG 1722 0.4233 MPCSLPLSHLSLSSLSKTPLTSSPSPKKPYPLHHRLSIKSSTNKTPETTTKTSSWVSPDWLTSLSKSLTTAKDDSGIPVASAKLDDVSDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAVAKHVLKNYGKYGKGLVAEVSEFLFGSGFAIAEGPLWTARRRAVVPSLHKRYLSIMVDRVFSRCAERLVEKLQPDAINGTAVNMEDKFSQLTLDVIGLSVFNYNFDALNSDSPVIEAVYTSLKEAEARSTDLLPYWKESSFLISLLCYGIWIFFLCLSIFTPFISRSLLLQIGFLCKIIPRQIKAEKAVSVIRETVEDLIAKCKEIVESEGERIDADEYVNDADPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKDSSSLAKAQEEIDRVLQGRRPSYENIKDLKFLTRCIMESLRLYPHPPVLIRRSQVPDELPGDYKINASQDIMISVYNIHRSSKVWDRAEEFLPERFDLDGPVPNETNTDFRFIPFSGGPRKCVGDQFALLEAIVALAVFLQHMNFELVPDQNIGMTTGATIHTTNGLYMKLSQRLK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00946 573 Pfam Cytochrome P450 99 259 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 Pfam Cytochrome P450 306 554 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 SUPERFAMILY Cytochrome P450 92 571 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 512 521 IPR017972 GO:0005506|GO:0016705
Vifa3g00946 573 MobiDBLite consensus disorder prediction 16 55 - -
Vifa3g00946 573 CDD CYP97 97 565 - -
Vifa3g00946 573 Gene3D Cytochrome P450 78 573 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 PANTHER CYTOCHROME P450 FAMILY 4 100 571 - -
Vifa3g00946 573 MobiDBLite consensus disorder prediction 36 55 - -
Vifa3g00946 573 PRINTS E-class P450 group I signature 471 495 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 PRINTS E-class P450 group I signature 509 519 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 PRINTS E-class P450 group I signature 103 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 PRINTS E-class P450 group I signature 368 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 PRINTS E-class P450 group I signature 519 542 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 PRINTS E-class P450 group I signature 388 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 PRINTS P450 superfamily signature 431 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 PRINTS P450 superfamily signature 519 530 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 PRINTS P450 superfamily signature 379 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g00946 573 PRINTS P450 superfamily signature 510 519 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00946 Vifa-Chr3 231051167 231053749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00946 25 571 Cytochrome P450 AT3G53130 75.182 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00946 K09837 - gmx:100803324 884.019