Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00945 ATGGTTTTCTCTTTTTTGCCACTGTTTCAGGGTCAGACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATCGTGGAGAGCGTAGGTGAAGGTGTGACTCATCTGAAACCAGGGGATAAAGCCCTGCCTGTATTCACAGGGGAGTGTGGTGAATGTCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGAGGTGTCATGCTCAATGATAACAAGTCTAGATTCTCTATCAATGGAGAGCCCATAAACCATTTCGTGGGCACCTCTACATTCAGTGAGTACACAGTGGTTCATGCTGGATGTGTTGCAAAGATCAATCCTGAAGCACCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTCTTGGTGCTACTGTGAATGTTGCAAAACCAAAGCCAGGTTCTTCAGTTGCTATCTTTGGGCTTGGAGTTGTTGGCCTTGCTGCTGCTGAAGGTGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGTCGATTTGAATTAGCTAAGAAGTTTGGAGTGAATGAGTTCGTGAACCCGGAAGTAGATTAA 609 0.445 MVFSFLPLFQGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDKALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGEPINHFVGTSTFSEYTVVHAGCVAKINPEAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGVVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPEVD 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00945 202 SUPERFAMILY GroES-like 13 139 IPR011032 -
Vifa3g00945 202 PANTHER ALCOHOL DEHYDROGENASE 12 200 - -
Vifa3g00945 202 Gene3D - 10 134 - -
Vifa3g00945 202 FunFam alcohol dehydrogenase 1-like isoform X1 7 134 - -
Vifa3g00945 202 Pfam Zinc-binding dehydrogenase 159 199 IPR013149 -
Vifa3g00945 202 Gene3D - 135 200 - -
Vifa3g00945 202 FunFam S-(hydroxymethyl)glutathione dehydrogenase 135 202 - -
Vifa3g00945 202 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 121 200 IPR036291 -
Vifa3g00945 202 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 21 35 IPR002328 GO:0008270|GO:0016491
Vifa3g00945 202 Pfam Alcohol dehydrogenase GroES-like domain 16 115 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00945 Vifa-Chr3 230887613 230888608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00945 16 197 Monolignol Biosynthesis Gene Families AT1G72680 27.322 8.51e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00945 K18857 - gmx:100801918 356.681