Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00943 ATGTCACCGTCACACATGTCCATGGAAACGGAAGCCGCGTCTCACGATTCCGTAAACGAGAACTGCAAGATGCAGCAGCGGCGGCGAGGCGAGTTGGTCGTGAACGGTTACTTCGTATACACACGACGCAAGAGGATCGAGCATCATTCTGATAACGAGATAGTGAAAAGACTCAGAACCGAAGAAAATGAAGAAGCTAAAGCGGAAATTGACTCCGGTGTGGCAGAGAAGAACAACACCGTCGTTTTATGGACTTCGAAACGGCAGCGGCGGCCGTCGTTTAAGCTTAAGGTTGATTCACAAGAAGATAATACGTCTGCTGACAAGGCTGCTGCTGTTTGTAATACGAAGAGCGTCGTCGCTAACGAGAAGCTAATGACTGTGAAGGAGCTCTTCGATACTGGTTTGCTCGATGGTGTTCCGGTTGTTTACGTCGGTTGCAAGAAGGAGGCTTCAGATTCGGGATTGCAGGGTGTAATTGCTGGTGGGGGGATATTGTGCTCGTGCTGTCTGTGCAATGGACGCAGAGTTATTCCTCCTTCCAAATTTGAGATTCATGCCTGCAAAATATATAAAAGGGCAACACAGTATATTTGCTTTGAAAATGGGAAGAGTCTGCTTGAACTATTGGGAGTATGCAGGACTGCTCCCTTACATACTTTGGAGACCACCATTCAAAATTTTCTTTGTATACCGCCTGAAGAGAAGTATTTTACTTGCAGGAGCTGCAGAGGGTGTTTCCCTGTTTCAACTGTGAAAAGAGTGGGGCTTATATGCCATTCTTGTGCGGAAACAAGCAAGTCTGAAGACGGTTCTATTCGTGCAGTTGGCAAAAGAGTCAGGACTCCCCGACCATATCTGTTCTCTAGTCCATCTAGTATTTCTGAAACGAGTATTTCTTCACAAACTAAGAGACAACAGAAGAAGAAAACAAAGTCATCAAAACGGGTTAGCATGACAAAATCTTCCAAGAAGAGTGCTTCTGTGCCTATTATCCAGAAGAATAGTTTGTGCAGCATGGAAACAAAGTCATCAAAACTGTTAGTCAAGTTTAAGATTGCTCCAATTACTTCAAATTCAAAATGTTCATCTCCACAAAATAAGAGTCAGTGGAGGATCAATAAGAAGCATCAGCGATTGCATAAATTAATTTTTGAAGAAGATGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCACGCGGACAGAAATTTCTTGAGGGTATAAAAAAGAAATCCGGAATTATTTGTCGATGCTGCAACACTGAGATCAGCCCCGCACAGTTTGAAATTCATGCAGGGTGGGCTTCTCGCAGGAAGCCTTATGCATACATCTACACGTCGAACGGGGTGTCTCTCCATGAGTTGGCATTATTCCTCTCAAAAGATCGCAAATGCACTGCAAAATATAATGATGATGCATGCATTGTTTGTTGGGATGGTGGAAATCTATTGCTCTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTACTCCACGTCGTGGCCGGTACTGTCCAATTTGTCAACACATGTTCCTTGGAGAAGGATCTGTGGCTCTCAATCCTGATGCTGTGGCGGCTGGAAGGATTGAAGGAGTTGATCCTATAGAACAGATTGCCAAGAGATGCATTCGGATAGTGAAAGATATTGAAGCTGAAATTGGTGGATGTGCTTTATGCAGGGGTTCTGACTTCAGCAAATCAGGATTTGGTCCACGCACAATAATAATATGTGATCAGTGTGAAAAGGAATATCACGTGGGCTGTTTGAGGGATCATAAAATGGCATATTTGAAGGAATTGCCGGAAGGGGACTGGCTTTGTTGCAACGATTGCACAAGAATACATTCTATTTTGGGGAACCTTCTAGTTAGGGTGGCTGAGAGACTCCCTGAATCTCTTTTGGATGTTATAAAGAAAAAGCAAGAGGAAAGATATTTGGAACCCCTTAATGAGATTGATATAAGATGGAGGCTTGTTAATGGCAAAGTTGCTTCTCCTGAAACCAGGCCGTTGCTTTTAGAGGCCTTGTCTATATTTAACGAATGTTTTGATCCTATAGTTGATGTAGCTACTGAACGGGACCTTATTCCTTCTATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTAATTGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGGATTTTTGGGAGAGACATTGCAGAGCTTCCTTTAATTGCTACAAGATACAAAAACCGTGGAAAGGGCTACTTCCAAACACTGTTCTCGTGCATTGAAAGGCTGCTGGCTTTCTTGAATGTGAAGAACCTTGTGCTACCAGCAGCTGAAGAAGCAGAATCCATATGGAAAAATAAATTTGGGTTTAGCAGGATGAAATTTGAGCAGCTTACCAACTATAGAAAGAACTGCCAACAGATGATGGCATTCAAAGGAACAGTTATGCTTCACAAAACAGTACCTTTATGTCGAGTAATCAATAGTGAGAAATGA 2523 0.4285 MSPSHMSMETEAASHDSVNENCKMQQRRRGELVVNGYFVYTRRKRIEHHSDNEIVKRLRTEENEEAKAEIDSGVAEKNNTVVLWTSKRQRRPSFKLKVDSQEDNTSADKAAAVCNTKSVVANEKLMTVKELFDTGLLDGVPVVYVGCKKEASDSGLQGVIAGGGILCSCCLCNGRRVIPPSKFEIHACKIYKRATQYICFENGKSLLELLGVCRTAPLHTLETTIQNFLCIPPEEKYFTCRSCRGCFPVSTVKRVGLICHSCAETSKSEDGSIRAVGKRVRTPRPYLFSSPSSISETSISSQTKRQQKKKTKSSKRVSMTKSSKKSASVPIIQKNSLCSMETKSSKLLVKFKIAPITSNSKCSSPQNKSQWRINKKHQRLHKLIFEEDGLPDGAEVAYYARGQKFLEGIKKKSGIICRCCNTEISPAQFEIHAGWASRRKPYAYIYTSNGVSLHELALFLSKDRKCTAKYNDDACIVCWDGGNLLLCDGCPRAFHKECASVSSTPRRGRYCPICQHMFLGEGSVALNPDAVAAGRIEGVDPIEQIAKRCIRIVKDIEAEIGGCALCRGSDFSKSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWLCCNDCTRIHSILGNLLVRVAERLPESLLDVIKKKQEERYLEPLNEIDIRWRLVNGKVASPETRPLLLEALSIFNECFDPIVDVATERDLIPSMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMLRIFGRDIAELPLIATRYKNRGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWKNKFGFSRMKFEQLTNYRKNCQQMMAFKGTVMLHKTVPLCRVINSEK 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00943 840 PANTHER AUTOIMMUNE REGULATOR 60 829 - -
Vifa3g00943 840 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g00943 840 SUPERFAMILY FYVE/PHD zinc finger 469 517 IPR011011 -
Vifa3g00943 840 Gene3D - 659 828 - -
Vifa3g00943 840 SMART PHD_3 562 619 IPR001965 -
Vifa3g00943 840 SMART PHD_3 474 515 IPR001965 -
Vifa3g00943 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 621 IPR013083 -
Vifa3g00943 840 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 559 621 - -
Vifa3g00943 840 MobiDBLite consensus disorder prediction 305 319 - -
Vifa3g00943 840 SUPERFAMILY FYVE/PHD zinc finger 554 616 IPR011011 -
Vifa3g00943 840 ProSiteProfiles Zinc finger PHD-type profile. 472 517 IPR019787 -
Vifa3g00943 840 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 682 806 IPR016181 -
Vifa3g00943 840 MobiDBLite consensus disorder prediction 286 304 - -
Vifa3g00943 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 544 IPR013083 -
Vifa3g00943 840 MobiDBLite consensus disorder prediction 284 328 - -
Vifa3g00943 840 Pfam Tify domain binding domain 411 457 IPR032308 -
Vifa3g00943 840 Pfam Tify domain binding domain 158 210 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00943 Vifa-Chr3 229905893 229914887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00943 117 837 PHD Transcription Factor Family AT2G36720 51.223 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00943 - - gmx:100798276 1144.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00943 3 229905893 229914887 Vifa3g00943 3 229905893 229914887 ECH
Vifa5g03103 5 1027660009 1027674007 Vifa3g00943 3 229905893 229914887 PCT