Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00930 ATGGCGGTTCCTGGGCGGCGCAACGGTTTCAACGACGACGATGAAGAATCCAACGGTATTTTCGAAGAACAATCTCTCGCCGTTGAAGAAACCGAGACTCCTCCTCATCTCCGTGACCTCTCCCATGCCGCTCAAACTGGCGACCTCACCGCCCTCCGCCTCGCTCTCGATAACTTGAGTGGTAGTATTGATGAGCCTCTAGAGGATGGGGATAGTGCTCTTCATTTGACGTGTTTGTACGGCCATTTTGCATGCGCCCGGCTTCTACTGGAAAGAGGAGCTGATTTGGAAGCTAAGGATGAAGATGGGGCAATTCCTTTACATGATGCATGTGCAGGAGGTTTTTTGGAGATAGTCCAACTTCTACTTAATAGAGCTAACGGCACCGAGCATATAAAAAGGATGTTAGAATCGGTCGATTCGGAGGGTGATACTCCTCTTCATCATGCTGCAAGAGGTGAGCATGCTGATGTAATTAGTTTATTGCTATCTAATGGTGCATCAGCCACAAAGGAAAACTTATATGGAAAGACCCCTGCAGAGTTACCCGAACAAGGCACAAATGCTAGAAGGCTGCTTGAAGCTGCTGTTACTGCCATGGCAATCTAA 609 0.4828 MAVPGRRNGFNDDDEESNGIFEEQSLAVEETETPPHLRDLSHAAQTGDLTALRLALDNLSGSIDEPLEDGDSALHLTCLYGHFACARLLLERGADLEAKDEDGAIPLHDACAGGFLEIVQLLLNRANGTEHIKRMLESVDSEGDTPLHHAARGEHADVISLLLSNGASATKENLYGKTPAELPEQGTNARRLLEAAVTAMAI 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00930 202 ProSiteProfiles Ankyrin repeat region circular profile. 142 173 - -
Vifa3g00930 202 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Vifa3g00930 202 ProSiteProfiles Ankyrin repeat profile. 102 134 IPR002110 GO:0005515
Vifa3g00930 202 Gene3D - 34 200 IPR036770 -
Vifa3g00930 202 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Vifa3g00930 202 SUPERFAMILY Ankyrin repeat 40 182 IPR036770 -
Vifa3g00930 202 Pfam Ankyrin repeats (3 copies) 102 171 IPR002110 GO:0005515
Vifa3g00930 202 Pfam Ankyrin repeats (3 copies) 40 100 IPR002110 GO:0005515
Vifa3g00930 202 SMART ANK_2a 142 171 IPR002110 GO:0005515
Vifa3g00930 202 SMART ANK_2a 102 131 IPR002110 GO:0005515
Vifa3g00930 202 SMART ANK_2a 69 98 IPR002110 GO:0005515
Vifa3g00930 202 ProSiteProfiles Ankyrin repeat region circular profile. 102 125 - -
Vifa3g00930 202 FunFam BRCA1-associated RING domain protein 1 34 201 - -
Vifa3g00930 202 PANTHER SOWAH (DROSOPHILA) HOMOLOG 25 197 - -
Vifa3g00930 202 ProSiteProfiles Ankyrin repeat profile. 142 174 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00930 40 188 Ion Channels AT2G25600 31.214 1.98e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00930 - - gmx:100527544 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00930 3 226469487 226470747 Vifa3g00930 3 226469487 226470747 ECH