Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00928 ATGCAAGTCTTGGAAGAACAACAACTCATGGTGGTTTCTAAGGATCTTACACAACAACAAATCATAAAAGGAAAGAGAACAAAGCGTCAAAGGTTGCCTTCTCCACTAAGGTTAGCCATGTCTTGCGATGAAGGAACAAGCTATTACGAAAACAATAATCACGATCACAACGAGCGAAATTCAAAAGGAATTGATTTCACGATAATAAAATCGTGTGACCGATCAGAGGAAGAAAAAGAAGAAGAAGATATGGCGAATTGTCTTATTCTATTAGCTCAAGGTCATCATTATCGTCGTCAGGAACATCATCCTGACAACGATAACAAAAGATCTTCAAATTTTTATCTTTACCAATGCAAGACATGCAATAGATGTTTCCCATCCTTTCAAGCACTTGGTGGACATAGAGCAAGTCATAGCAAACCTAACAAACCAAATTGTAGCAATAATGTTACAAGAACTTTTGTTGATGATCATTATGATCCAACCATGAATACTATACTATCATTACAAGCCTTTACGGCCGCGACCCCGATTACTACTATTACTACTAGTACTACTCCTACAAAAAAGTCGAAAGTTCACGAGTGTTCGATATGTGGCGCGGAATTCTCATCGGGGCAAGCATTGGGAGGACATATGCGTCGACATCGAACACTCGTGAACACGTCAACAACAACAACCGCGACAACAACTTCTTTGAGTATGAGTATTGGTAGCCCTAAATCTCATGAAGCTAAGAAACCAAGAAAAGTTTTGAAGTTGGATTTGAATCTTCCAGCTCCTGAAGTTGAACAAAGAGATCAATCCAAGTTTTCCTTTCAGCCTAGAGAAAATGTTATTGCTTTCTCTAGTAATTCTTCTTTGGTGGATTGCCATTTCTAA 885 0.3853 MQVLEEQQLMVVSKDLTQQQIIKGKRTKRQRLPSPLRLAMSCDEGTSYYENNNHDHNERNSKGIDFTIIKSCDRSEEEKEEEDMANCLILLAQGHHYRRQEHHPDNDNKRSSNFYLYQCKTCNRCFPSFQALGGHRASHSKPNKPNCSNNVTRTFVDDHYDPTMNTILSLQAFTAATPITTITTSTTPTKKSKVHECSICGAEFSSGQALGGHMRRHRTLVNTSTTTTATTTSLSMSIGSPKSHEAKKPRKVLKLDLNLPAPEVEQRDQSKFSFQPRENVIAFSSNSSLVDCHF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00928 294 Gene3D Classic Zinc Finger 115 217 - -
Vifa3g00928 294 SMART c2h2final6 195 217 IPR013087 -
Vifa3g00928 294 SMART c2h2final6 117 139 IPR013087 -
Vifa3g00928 294 SUPERFAMILY beta-beta-alpha zinc fingers 116 217 IPR036236 -
Vifa3g00928 294 PANTHER ZINC FINGER PROTEIN ZAT5 73 274 - -
Vifa3g00928 294 ProSitePatterns Zinc finger C2H2 type domain signature. 197 217 IPR013087 -
Vifa3g00928 294 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Vifa3g00928 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 217 IPR013087 -
Vifa3g00928 294 MobiDBLite consensus disorder prediction 223 240 - -
Vifa3g00928 294 MobiDBLite consensus disorder prediction 223 249 - -
Vifa3g00928 294 Pfam C2H2-type zinc finger 194 218 - -
Vifa3g00928 294 Pfam C2H2-type zinc finger 117 142 - -
Vifa3g00928 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 144 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00928 Vifa-Chr3 225900056 225900940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00928 21 293 C2H2 Transcription Factor Family AT5G03510 39.446 3.65e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g00928 zf-C2H2_6 1.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00928 - - tpra:123884313 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00928 3 225900056 225900940 Vifa3g00928 3 225900056 225900940 ECH
Vifa3g00928 3 225900056 225900940 Vifa1g02431 1 390626841 390627695 ECH