Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00904 ATGATCACTTGTGCTTCCATTGCTTTTCTTAGTCTGTCCTCTTTGTTAGCAGCCACTACCTCTTTAAGAAATATCGACGAGAAGAATCAGCTTCTTTTGGGAATTCGTCGAGCCAATAGACCACAAACTGTAATGCCATCATCAGTTTTGTCCAGCGACAGTATGCACATTGGACTTCTGGCAGCCGCTGCTCATGCTGCAGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGGGCTAGTCCGTCTGAGTTTGTCATACCACTTTCGAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGCTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGGATAAGTGATCTGGATGCGGTTCGGTGGCCGAGTTCTCATTGGCGTTCTGTTAAGGTCGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTTTCATTATGGGAAATCGAGCCTTTAACAACATTCCCAATGTATCCATCATTGTTTCCCCTCAGATTGAAACGACCGTGGCATCCTGGCACCTCTTCTTTGCTTGATGGAAGAGATGATGTGGCAAATGGTCTGATGTGGATGAGAGGTGGACCTGCAGACCAAGGTCTCAATTCTCTTAATTTTCAAGGTGCTGGTGGCATGTTACCATGGATGCAGCAGAGACTAGATCCAACTTTACTCGGAAACGATCATAATCAACAATATCAAGCCATGTTGGCGGCAGCTGGAATGCAGAATATGGGTAGTGGATATCTCATGAGGCCACAAATGATGAATTTTCAACAACAGCCTATCCAGTACCTTCAGTCTGGAAACAATAATTCGCCTTTGCAACTTCAGCAACCACACGCAATTCCACAATCAGTGTCCTCTAATATGATGCAACCACAAGGCCAAGTGCTTACTGAAAACCTGTCTCAGCACCTCCTTCAGAAAACAAATAACAATCAAGAAGTCCAAGGTCAACAGCAGCAACATGGTTATCAAGATACACTTCTTATTCAAAATGATCAACTCCATCAGCGACAACAACAACAGTCCAATGCGCCATCACCATCGTATACAAAACAAGATTTCCTGGATTCAAACTTGAAGTTTCCTGCTTCGGCTTCCTCCGGACAAAACATGCTTGGTTCGCTTTGCAATGAAGGAACTGGCAATCTCTTGAATCTATCAAGTCTATCCAGAAGCGGTCAGTCGTTGATGACCGAACAGTTACCCCAACAATCATGGACTCAGAAGTATGGGAATATGCAGGTCAACGCGTTTAGCAACACAATGTCTCATGCACAATTTTCTGGAAAAGATTTGGCAGTGGTGCCACATTGTGATTCAGATACGCAAAACCATACTCTCTCGGGTGTCAATATTGATTCATCTGGCCTTCTACTCCCCACCACTGTCCAAGGTTACACCACTTCGTCTGCTGACACTGGTGCGTCAACGATGCAGTTAGGGGAGTCGGGATTTCAGAGTTCTCTATACGCCTGCATGCAAGATTCATCTTCATTTTTGCAAAATGCAGAGCAAAGCGACCCACAAAACCAGAACCCAACATTTGTGAAGGTTTACAAATCGGGTTCGGTTGGTCGTTCACTTGACATCTCTCGGTTCAACAGCTATCGTGAGCTGCGAGAGGAGTTGGGTCAGATGTTAATTTGTAAAAATGTATATACAGGTAGAAGAGTCAGAAGTTGGTGA 1743 0.4441 MITCASIAFLSLSSLLAATTSLRNIDEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLLDGRDDVANGLMWMRGGPADQGLNSLNFQGAGGMLPWMQQRLDPTLLGNDHNQQYQAMLAAAGMQNMGSGYLMRPQMMNFQQQPIQYLQSGNNNSPLQLQQPHAIPQSVSSNMMQPQGQVLTENLSQHLLQKTNNNQEVQGQQQQHGYQDTLLIQNDQLHQRQQQQSNAPSPSYTKQDFLDSNLKFPASASSGQNMLGSLCNEGTGNLLNLSSLSRSGQSLMTEQLPQQSWTQKYGNMQVNAFSNTMSHAQFSGKDLAVVPHCDSDTQNHTLSGVNIDSSGLLLPTTVQGYTTSSADTGASTMQLGESGFQSSLYACMQDSSSFLQNAEQSDPQNQNPTFVKVYKSGSVGRSLDISRFNSYRELREELGQMLICKNVYTGRRVRSW 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00904 580 Pfam Auxin response factor 63 146 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa3g00904 580 MobiDBLite consensus disorder prediction 353 373 - -
Vifa3g00904 580 Gene3D - 101 173 - -
Vifa3g00904 580 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 569 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa3g00904 580 ProSiteProfiles PB1 domain profile. 532 580 IPR000270 GO:0005515
Vifa3g00904 580 FunFam Auxin response factor 101 173 - -
Vifa3g00904 580 Gene3D - 528 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00904 Vifa-Chr3 224235607 224238571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00904 1 571 B3 DNA Binding Superfamily AT5G37020 58.103 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00904 - - gmx:100784373 850.892