Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00901 ATGACCCAAACAACCTGCATTTTCCTGATCTCACTTCTTGCTTCCTTTTTCACCCATGGAACTTCAGTGCTCAACCTCACTCTCCCAGCTCAACATCCACACCCTGAATCTGTTGCCATAGAAGTTCACAGGAAAGTGAATGAATCAATGAGAAGAAGAGAAATGCTATCAATATCAAGCAAAGATTTGTCATCATCCTGCCAAACAGGAAACCCGATAGACGATTGTTGGAAATGCGAGGCAGATTGGTCCAACAATCGTCAAAGGTTAGCAGATTGCGCAATTGGGTTTGGCCAAAATGCGAAAGGAGGAAAAGGTGGTAAATTCTACATTGTAACAGACTCATCAGACAATGATCCTGTGAATCCGAAACCTGGTACACTAAGATACGCTGTCATACAGAATGAACCATTGTGGATTGTTTTTCCAAGTAACATGATGATTGAGTTGTGTCAAGAGCTTATTTTTAATAGCTTTAAGACTATTGATGGACGTGGTGCTGATGTTCATATTGTGGGTGGTGGCTGCATTACTCTTCAGTATATTAGTAATGTTATTATACATAACATCCATGTTCATCATTGTCATCCTTCTGGTAACACTAACGTACGTTCAAGTCCCGAACACTACGGATACAGAACAATATCAGACGGAGACGGAATCTCAATATTCGGATCAAGTAACATATGGATAGACCATTGTACACTCTCCCGTTGCAAAGACGGTTTAATCGACGCCGTTATGGGTTCAACCGCAATAACCATCTCCAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGTCACAGTGACCATTACAAACCAGATTCAGCAATGCAAGTAACTATAGCATTCAACCATTTTGGTGAACAGTTAGTTCAAAGAATGCCACGTTGCAGACTCGGATACATCCATGTTGTGAATAACGATTTTACGCGATGGGAAATGTATGCTATTGGTGGAAGCGGAGGACCCACTATTTATAGTCAAGGTAACCGGTATACGGCTCCTGAGGATGTTGATGCGAAACAAGTGACGAAGAGGTTGGATTCGGGGGAAGGGGAATGGACGACATGGAATTGGAAATCGGAAGGTGATTTTATGGTGAATGGTGCATTTTTTGTTGATTCAGGTAGTGAGAGTGAAGGGAATTTTCAGAAGGCTTATAGTGTTGATCCTAAAACCGTTGATCGGATTTCTGTTCTTACTATGACTGCTGGTGTTCTTGGTGTTGCTAGGGACAACAATCTAGGAATGTGGACAAGAGCACCAAACGGTGGTGGAGATTATAGTATATCATATTCCGGAGAACAAGAGTACACTGATGACATGTCCCAAAGTACGATGATGTTGACCCATTCCTTTACTTTGACTCTTGTACTATCTCTTTTTGTTGCACTCTTGTGTTTGTTCTCTCATGCACTTATCCTATCATAA 1443 0.4144 MTQTTCIFLISLLASFFTHGTSVLNLTLPAQHPHPESVAIEVHRKVNESMRRREMLSISSKDLSSSCQTGNPIDDCWKCEADWSNNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIELCQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTISDGDGISIFGSSNIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTIYSQGNRYTAPEDVDAKQVTKRLDSGEGEWTTWNWKSEGDFMVNGAFFVDSGSESEGNFQKAYSVDPKTVDRISVLTMTAGVLGVARDNNLGMWTRAPNGGGDYSISYSGEQEYTDDMSQSTMMLTHSFTLTLVLSLFVALLCLFSHALILS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00901 480 FunFam Pectate lyase 70 412 - -
Vifa3g00901 480 Pfam Pectate lyase 156 324 IPR002022 -
Vifa3g00901 480 Gene3D - 70 412 IPR012334 -
Vifa3g00901 480 SUPERFAMILY Pectin lyase-like 63 410 IPR011050 -
Vifa3g00901 480 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Vifa3g00901 480 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Vifa3g00901 480 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Vifa3g00901 480 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Vifa3g00901 480 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Vifa3g00901 480 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Vifa3g00901 480 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Vifa3g00901 480 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Vifa3g00901 480 SMART amb_all 145 342 IPR002022 -
Vifa3g00901 480 PANTHER PECTATE LYASE 18-RELATED 30 414 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00901 Vifa-Chr3 223590856 223593289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00901 1 476 Polysaccharide Lyase AT3G53190 66.597 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00901 K01728 - gmx:100815062 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00901 3 223590856 223593289 Vifa3g00901 3 223590856 223593289 ECH
Vifa5g03073 5 1015345474 1015348365 Vifa3g00901 3 223590856 223593289 PCT