Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00900 ATGCAAGGAGAAAATTTACATAAGGGAACTTGGCTTCAAGAGGAAGATGAACAATTGATTAGCTTTGTGACTCGTCTTGGGGAACGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGACTCAGGAGAAGTGGTAAAAGCTGTAGGTTAAGGTGGTTGAACTATCTTCGACCAAATCTCAAGCATGGCCCTTTTAGTGTTGAAGAAGAGAGGCTTATTGTTCAACTTCAACTGCAATGGGGTAACAAATGGTCCAAGATTGCTCGCAGGCTTTCGGGAAGAACAGATAATGAAATAAAGAACTACTGGAAAACTCATTTACGAAAAAGAGTACAAGTTCAACAAAAAGGTGAGTTCATGTATAAAGTAGAGAATGTGGCTCATGATTTCAACAAGAAAAGCATTGAAGTGGTTTGCAGCAGTGAGGGAGAGAGTAAGGAAAACTCCATAGATAGATCTCCTTTATCAGATTGGGGAATGAGAAATTCACCTTATCATGAAAGTAAGATATTGGATTGGATAGCAGAATTGCAAAATGGATTTGGTGATAAGGAAAAGGAATTAGGACAAGATTGTAATAGCAATGGATCAATGTATGAATATAATCCCCATCAAGAATATTATGATACATGGGATTATTCAGGTTTTCTATGGGACTTGTGA 660 0.3833 MQGENLHKGTWLQEEDEQLISFVTRLGERRWDSLAKVAGLRRSGKSCRLRWLNYLRPNLKHGPFSVEEERLIVQLQLQWGNKWSKIARRLSGRTDNEIKNYWKTHLRKRVQVQQKGEFMYKVENVAHDFNKKSIEVVCSSEGESKENSIDRSPLSDWGMRNSPYHESKILDWIAELQNGFGDKEKELGQDCNSNGSMYEYNPHQEYYDTWDYSGFLWDL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00900 219 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Vifa3g00900 219 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vifa3g00900 219 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 154 - -
Vifa3g00900 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vifa3g00900 219 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vifa3g00900 219 CDD SANT 63 106 IPR001005 -
Vifa3g00900 219 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vifa3g00900 219 FunFam Myb transcription factor 8 60 - -
Vifa3g00900 219 CDD SANT 10 55 IPR001005 -
Vifa3g00900 219 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Vifa3g00900 219 SMART sant 60 108 IPR001005 -
Vifa3g00900 219 SMART sant 7 57 IPR001005 -
Vifa3g00900 219 Gene3D - 62 134 - -
Vifa3g00900 219 Gene3D - 8 60 - -
Vifa3g00900 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00900 Vifa-Chr3 223413503 223414577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00900 4 115 MYB Transcription Factor Family AT5G59780 58.929 9.48e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa3g00900 Myb_DNA-binding 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00900 K09422 - gmx:100783472 303.523