Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00890 ATGGCGAAAAACTGCTTTGACCAGAAAACGATGACGTATTCCTCACCAAGACAACCTATCTACCTTCCCACCGAACCCAATCTCTCCCTAACCGCCTTCCTCTTCCAGTCCACCTCCTCCATCGGCGACAACATCGCCCTCGCAGACGCTCACACCGGTGACTCCCTAACCTTCCGCCAACTTAAAACCCAAGTCACCGCCCTCTCCCGCTCCTTACTCCGCCTCGGCATCAAACGGGGCGACGTCGTTTTGCTATTCGCTCCTAACTCCATACGCTTCCCTGTCTGCTTCCTCGCTATTGCCGCTATAGGTGCTATTGCCACCACCTGTAGTCCTTTATACACCGTCTCCGAACTCTCCAAACAAATCCAAGACTCCAATCCCAAACTCGTGTTCACCGTATTGGAGCTTCTAGATAAAATGGAACAATTACCCTTGGATTTATATTTACCTTCAATATTGCTTGACGGTGCATTGGACCAAATATTTCCCCCGAAAATATTCAGTTCTTTGATTTGCGACTACGAGGAACTTATCGGAGAGTCAAAAGAGAGCTCCGACGAGTTTCCGGCAAATAGTATCGTTTCACAATCCGATGTTGCGGTGATTCTGTACTCTTCAGGAACCACGGGGAGAAGTAAGGGAGTAATGCTGACTCACCGGAACTTCATAGCGACCGCAGTGGCAGGAGCGGCGGATCAGGATTTTTACGGCGAGGGGAAGAATGTGTTCTTATGTTTGGTGCCAATGCATCACGTGATGGGATTGACTGTGATAACGTACACGCAGCTGCGGAGAGGGAATACAGTGGTGATAATGGGTAAATTTGAGCTGCAGAAGACTTTGGCGGCTGTGGAGAAGTTTAGAGTGACGCATTTGTACGTTGCTCCACCGGTGATGGTGGAGCTGGTCAATCAGCGTCACGTTGTGAATGGTTATGACTTGTCGTCATTGAAACAACTTGCCGGTGGTGCTGCTCCTTTAGGGAAAGATTTGATGCAAGAGTGTGCTAAAATTCTACCCAAAATTGAAATCATTCAGGGTTATGGCATGACGGAAGGATGTGGACTTATTTCTTGTGAAAATCCAAAGGAAGAGTGGTTCATTACTGGTTTAGGTTCAACTGGAACACTGCTTCCTAGTTTTGAATCCCAAATAGTTAGTTTGGAAACATTTAAACCCCTTCCACCAAATCAATCAGGAGAGATTTGGTTACGAGGACCTACTATGATGAAAGGATACTTTAACAATTCAGAAGCAACAAAACTGACAATTAACGATGATGGTTGGATGATTACTGGAGATCTTGGATATTTTGACGAAAAGGGACAACTATTTATTGTGGATCGTATAAAAGAGCTCATCAAATGTAGCGGGTATCAAGTGGCTCCAGCTGAACTTGAAGACTTATTAGTTTCTCATCCTGAAATTTCTGATGCTGGCGTGATCCCATCCCCTGATGCCAAAGCTGGTGAGGTTCCGGTGGCTTTCGTTGTTCGCTCACCCAATAGCTTGATAACCGAAGAGGACATTCTGAAGTTTGTGGCAAAACAGGTTGCACCATATAAAAGGTTGCGGCGAGTGACTTTTATAGACAAGATTCCCAAGTCACCCACCGGAAAGATCTTAAGAAAGGATCTTGTCATTTTGGATCGACAGAAGACATCCAAGTTATAG 1677 0.4586 MAKNCFDQKTMTYSSPRQPIYLPTEPNLSLTAFLFQSTSSIGDNIALADAHTGDSLTFRQLKTQVTALSRSLLRLGIKRGDVVLLFAPNSIRFPVCFLAIAAIGAIATTCSPLYTVSELSKQIQDSNPKLVFTVLELLDKMEQLPLDLYLPSILLDGALDQIFPPKIFSSLICDYEELIGESKESSDEFPANSIVSQSDVAVILYSSGTTGRSKGVMLTHRNFIATAVAGAADQDFYGEGKNVFLCLVPMHHVMGLTVITYTQLRRGNTVVIMGKFELQKTLAAVEKFRVTHLYVAPPVMVELVNQRHVVNGYDLSSLKQLAGGAAPLGKDLMQECAKILPKIEIIQGYGMTEGCGLISCENPKEEWFITGLGSTGTLLPSFESQIVSLETFKPLPPNQSGEIWLRGPTMMKGYFNNSEATKLTINDDGWMITGDLGYFDEKGQLFIVDRIKELIKCSGYQVAPAELEDLLVSHPEISDAGVIPSPDAKAGEVPVAFVVRSPNSLITEEDILKFVAKQVAPYKRLRRVTFIDKIPKSPTGKILRKDLVILDRQKTSKL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00890 558 Gene3D - 12 452 IPR042099 -
Vifa3g00890 558 ProSitePatterns Putative AMP-binding domain signature. 203 214 IPR020845 -
Vifa3g00890 558 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 452 - -
Vifa3g00890 558 Pfam AMP-binding enzyme 42 457 IPR000873 -
Vifa3g00890 558 CDD 4CL 22 547 - -
Vifa3g00890 558 SUPERFAMILY Acetyl-CoA synthetase-like 22 548 - -
Vifa3g00890 558 Pfam AMP-binding enzyme C-terminal domain 466 541 IPR025110 -
Vifa3g00890 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 548 - -
Vifa3g00890 558 Gene3D - 453 555 IPR045851 -
Vifa3g00890 558 FunFam 4-coumarate--CoA ligase 2 453 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00890 Vifa-Chr3 221421894 221424665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00890 13 554 Monolignol Biosynthesis Gene Families AT4G05160 57.565 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00890 K01904 - psat:127097095 899.042