Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00889 ATGGCGAAAAACTGCTTCGACCTGAAAACGATGACGTATTCCTCACCAAGACAACCTATCCACCTTCCCACCGATCCCAATCTCTCCCTAACCGCCTTCCTCTTCCAGTCCACCTCCTCCATCGGCGACAACATCGCCCTCGCAGACGCTCAAACCGGTGACTCCCTAACCTTCCGCCAACTTAAAGCCCAAGTCACCGCCCTCTCCCGCTCCTTACTCCGCCTCGGCATCAAACGAGGCGACGTCGTCTTGCTATTCGCACCTAACTCCATACGCTTCCCTGTCTGCTTCCTAGCTATAGCATCCATAGGTGCTATTGCCACCACCTGTAGTCCTTTATATACCGTCTCCGAACTCACCAAACAAATCCAAGACTCCAAACCCAAAGTCATCGCTACCGTATATGAGCTTCTACACAAAATCGAACCATTACCTTTGGATATACCTTCAATATTGCTTGACGATGCTTCAACCAAAGTATTTTCCTCTAAAATATTCAGTTCTTTGGTTTGGGACTACAAGGATCTTACCAAAGAGTCAAACAAGAGCTCCAACGAGATTCCAGCAAACGGTGTTGTTTCGCAATCCGACGTGGCGGTGATCCTATACTCTTCAGGAACCACCGGAAGAAGTAAGGGAGTGATGCTAACTCATCGAAACTTCATAGCGGCGGCGTTGGCTGGAGTGGCGGATCAGGAACACTACGGAGAGGGAAAGAACGTGTTCTTATGTTTGGCGCCAATGCATCATGTGTTGGGATTAGGAATGATAACGTACACGCAGCTGCGGAGAGGGGATATGGTTGTATCGATGGCTAGATTTGAACTGGACAAGACTTTGGCAGCTATCCAGAAGTTTAGGGTGACACACTTGTACGTTGCTCCCCCAGTGATGATGGAGCTGATCAAGCGGCGTGAAGTTGTGAACAGTTATGACTTGTCGTCGCTGAAACAACTTGCCGGCGGTGCTGCTCCGTTGGGGAAAGATGTGATGCAAGAGTGTGCTAAGATTCTACCTCAAGTTGAAATCATTCAGGGGTATGGCATGACGGAAGCATGTGGACTTATTTCATATGAAAATCCGAACGAAGAATGGTTCGTTTCTGGTTTAGGATCAACTGGAACACTAGTTCCAAGTGTAGAATCCCGAATTGTTAGTTTGGAAACATTTAAGCCTCTTCCACCCAACCAATTAGGGGAAATTTGGTTTAGAGGACCTATTATGATGAAAGGATACTTTAACAATCCAGAAGCAACAAAACAGACCATTAATGATGAGGGTTGGTTGATTACAGGAGATCTTGGATATTTTGATGAAAAGGGGCAGCTATTTGTTGTCGATCGAATAAAAGAGCTTATTAAATGTAGCGGATATCAAGTGGCGCCTGCTGAGCTTGAAGACTTACTGGTTTCTCATCCTGAAATTTCTGATGCTGGGGTGATTCCATCACCCGATGCCAAAGCTGGTGAGGTTCCAGTGGCTTTTGTAGTTCGTTCGCCCAATAGCTCGATAACCAAAGAGGACATTCTGAAGTTTGTAGCAGAACAGGTTGCACCATACAAAAGATTGCGGCGAGTAACTTTTATAGAGAGAATTCCTAAGTCACCCACCGGAAAGATCTTAAGAAAGGATCTTGTCATTTTGGATAGACAAAAGATATCAAAGTTATAG 1671 0.459 MAKNCFDLKTMTYSSPRQPIHLPTDPNLSLTAFLFQSTSSIGDNIALADAQTGDSLTFRQLKAQVTALSRSLLRLGIKRGDVVLLFAPNSIRFPVCFLAIASIGAIATTCSPLYTVSELTKQIQDSKPKVIATVYELLHKIEPLPLDIPSILLDDASTKVFSSKIFSSLVWDYKDLTKESNKSSNEIPANGVVSQSDVAVILYSSGTTGRSKGVMLTHRNFIAAALAGVADQEHYGEGKNVFLCLAPMHHVLGLGMITYTQLRRGDMVVSMARFELDKTLAAIQKFRVTHLYVAPPVMMELIKRREVVNSYDLSSLKQLAGGAAPLGKDVMQECAKILPQVEIIQGYGMTEACGLISYENPNEEWFVSGLGSTGTLVPSVESRIVSLETFKPLPPNQLGEIWFRGPIMMKGYFNNPEATKQTINDEGWLITGDLGYFDEKGQLFVVDRIKELIKCSGYQVAPAELEDLLVSHPEISDAGVIPSPDAKAGEVPVAFVVRSPNSSITKEDILKFVAEQVAPYKRLRRVTFIERIPKSPTGKILRKDLVILDRQKISKL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00889 556 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 450 - -
Vifa3g00889 556 Pfam AMP-binding enzyme 42 455 IPR000873 -
Vifa3g00889 556 Gene3D - 12 450 IPR042099 -
Vifa3g00889 556 CDD 4CL 22 545 - -
Vifa3g00889 556 Gene3D - 451 553 IPR045851 -
Vifa3g00889 556 FunFam 4-coumarate--CoA ligase 2 451 551 - -
Vifa3g00889 556 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 546 - -
Vifa3g00889 556 Pfam AMP-binding enzyme C-terminal domain 464 539 IPR025110 -
Vifa3g00889 556 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Vifa3g00889 556 SUPERFAMILY Acetyl-CoA synthetase-like 23 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00889 Vifa-Chr3 221133832 221136224 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00889 13 553 Monolignol Biosynthesis Gene Families AT4G05160 57.615 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00889 K01904 - psat:127097095 1011.52