Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00875 ATGCTTAGTTCTTTTGTTGGAAAGGTACAAAAGAGTTTATCAATGTTTGTACCAAGAAAGCACGCATTGAGTTACTGGAATGAGGATCATGCCACAACCACAGGTGACTTGGCTGATGATGTTATGAAAGGTTACTTTGCTGTTCTTGCAAGGAAGGGAAATGAAACTAGAAGGTTCATTGTTGGGTTAGATTACTTGACAGATCCTGCTTTTGTGGGATTGCTTGATGAAGCCTGGGAGGAGTATGGTTTTAGACAGAAGGGAACTCTCGTTGTTCCGTGTCGGCCCAAGGATTTGCAGAACATTCTAGATGGTCGGAAAACATAG 327 0.422 MLSSFVGKVQKSLSMFVPRKHALSYWNEDHATTTGDLADDVMKGYFAVLARKGNETRRFIVGLDYLTDPAFVGLLDEAWEEYGFRQKGTLVVPCRPKDLQNILDGRKT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00875 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 24 101 IPR003676 GO:0009733
Vifa3g00875 108 Pfam Auxin responsive protein 36 103 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00875 Vifa-Chr3 216100344 216100670 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00875 27 95 Calmodulin-binding Proteins AT3G43120 40.580 1.46e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00875 - K14488 tpra:123895443 182.57