Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00873 ATGCTTAGTTGTTTTATTGGGAAGCTACAAAAGAGTTTATCAATGTTTGTACCAAGAAAGCATGCATTGAGCTACTGGGATGAAGATCATGCCTCAAGCACGAGTGATTTGGCCGATGATGTTACGAAAGGATACTTTGCTGTTCTTGCAAGGAAGGGTGAGGAAACTAGAAGGTTTATTGTGGGGTTAGAATACTTGAATGATCCTGCTTTTGTGGGATTGCTTGATGATGCTTGGGAGGAGTATGGTTTCAGACAGAAGGGAACTCTTGTTGTTCCATGTCGGCCGATGGAGTTGCAGAACATTCTAGATGGTCACAAAACATAG 327 0.422 MLSCFIGKLQKSLSMFVPRKHALSYWDEDHASSTSDLADDVTKGYFAVLARKGEETRRFIVGLEYLNDPAFVGLLDDAWEEYGFRQKGTLVVPCRPMELQNILDGHKT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00873 108 Pfam Auxin responsive protein 32 103 IPR003676 GO:0009733
Vifa3g00873 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00873 Vifa-Chr3 215970100 215970426 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00873 6 94 Calmodulin-binding Proteins AT4G34750 38.889 7.31e-13 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00873 - K14488 tpra:123895443 173.326