Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00871 ATGATTCATTCTTTTGTTGGGAAGATCCAAAAGGGTATTTCACACTTTGTACACAAAAGACACGGTTTGAATGCAGAAGATGTTAGGGAGGGATATTTTGCTGTAGTTGCAGTGAAGAATGGAGAAATAAAAAAGTTTATCATTGGATTGGAGTACTTGAGTGATCCTGAATTTTTGGAACTACTAGATCAAGCTCGGGAAGAGTATGGTTTCATACAGAGAGGAGCTATTGCTGTCCCTTGTCGGCCTCAACAATTGCAGACCATATTAGATGGTCAGAGATGA 285 0.393 MIHSFVGKIQKGISHFVHKRHGLNAEDVREGYFAVVAVKNGEIKKFIIGLEYLSDPEFLELLDQAREEYGFIQRGAIAVPCRPQQLQTILDGQR 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00871 94 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 21 88 IPR003676 GO:0009733
Vifa3g00871 94 Pfam Auxin responsive protein 24 90 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00871 Vifa-Chr3 215490776 215491060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00871 27 90 Calmodulin-binding Proteins AT3G43120 40.625 1.98e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00871 - K14488 gmx:100775971 133.265