Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00867 ATGGCTAACCAACCTCAACCTGAATCCTCAGATTCAAAGGGAACCAAACGTGACTTCAGCACAGCTATCCTAGAGCGAAAGAAGGCACCCAACCGTCTCGTTGTTGATGAGGCCGTTAACGACGACAACTCAGTCGTCGCACTTCATCCTGAAACCATGGAGAAACTTCAACTTTTTCGTGGCGATACCATTCTGATCAAGGGGAAGAAGAGGAAAGATACGATTTGTATTGCACTTGCTGATGATACTTGTGATGAGCCAAAGATTAGAATGAATAAGGTTGTGAGGAACAATCTTAGGGTTAGGCTTGGAGATGTTGTTTCTGTTCATCAATGTCCTGATGTCAAATATGGAAAGCGGGTTCATATTCTTCCTGTGGATGATACTATTGAAGGGGTTACTGGGAACCTCTTTGATGCCTACTTGAAACCTTATTTTCTGGAGGCTTATCGTCCAGTTAGGAAGGGAGATTTCTTCCTTGTGAGAGGCGGAATGAGAAGTGTGGAATTCAAAGTTATTGAATGTGACCCTCAGGAGTATTGTGTTGTTGCGCCTGACACTGAGATCTTCTGTGAAGGAGAGCCTGTTAAAAGGGAAGATGAGAATAGACTAGATGAGGTTGGTTATGATGATGTTGGTGGTGTTAGAAAGCAGATGGCTCAGATTCGTGAACTGGTGGAACTGCCGTTGAGGCATCCACAATTATTCAAGTCAATTGGTGTTAAGCCACCAAAAGGTATTTTGTTGTATGGACCCCCTGGATCTGGTAAGACTTTAATTGCACGAGCTGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATCAATGGTCCTGAGATCATGTCAAAATTGGCTGGTGAGAGTGAAAGTAATCTGAGGAAGGCTTTTGAAGAAGCTGAGAAGAATGCACCCTCAATCATCTTCATTGATGAGATTGACTCCATTGCTCCAAAGAGGGAGAAGACTAATGGTGAAGTTGAGCGGAGAATTGTTTCCCAACTCCTGACTCTCATGGACGGGCTTAAATCACGCGCACATGTTATTGTTATGGGAGCAACAAATCGTCCCAATAGCATTGACCCAGCTCTCAGGAGGTTTGGAAGGTTTGATCGGGAGATAGATATTGGTGTACCAGATGAAGTTGGACGCCTTGAGGTTCTTCGTATCCATACGAAAAATATGAAGCTTTCCGAAGATGTTGATTTGGAAAAGATTGCTAAGGAAACCCATGGTTATGTTGGTGCTGATTTAGCTGCTTTGTGTACCGAAGCTGCACTTCAGTGTATCAGAGAGAAAATGGACGTGATTGACCTTGAGGATGAAACCATTGATGCTGAGATATTAAACTCAATGGCAGTCACTAATGAACATTTCCATACTGCACTTGGATCAAGCAATCCCTCTGCTCTTCGTGAAACTGTTGTTGAAGTGCCCAATTGCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGCGTGAACTCCAGGAGACTGTTCAATATCCAGTGGAACACCCTGAGAAATTTGAGAAGTTTGGAATGTCACCTTCCAAAGGAGTTCTGTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTTTTGGCTAAAGCTATTGCCAATGAATGTCAAGCAAACTTCATTAGTATCAAAGGTCCTGAGCTACTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAAGCTCGTGGTTCTGCTCCATGTGTCCTATTCTTTGATGAACTTGATTCTATTGCAACTCAGAGAGGCAGTAGTTCTGGAGATGCCGGTGGTGCTGCTGACAGGGTTTTGAATCAATTGCTTACAGAAATGGATGGAATGTCGGCAAAGAAAACTGTGTTTATCATTGGGGCAACTAATCGACCAGACATTATAGACCCTGCTCTACTGCGACCTGGACGTCTGGACCAGTTGATTTATATCCCCCTTCCAGATGAGGATTCACGCCATCAGATATTCAAAGCTGCCTTGAGAAAATCCCCCATTGCTAAGGATGTTGACATCAGAGCTCTTGCCAAGTACACTCAAGGCTTCAGTGGAGCTGATATTACTGAAATTTGCCAGCGTGCATGCAAGTATGCTATAAGAGAGAACATTGAGAAGGATATTGAAAGAGAAAGGAGAAGAAGTGATAATCCTGAGGCTATGGAAGAAGATAATGAAGATGACGAGGTGGCTGAAATCAAAGCAGCTCATTTTGAAGAGTCAATGAAGTATGCACGCAGAAGTGTTAGTGATGCTGATATCCGCAAGTACCAAGCATTTGCCCAAACCTTGCAGCAGTCAAGAGGGTTTGGAAGCGAGTTCCGGTTTGCAGACACCAGTGCTGGTGGTACCACCACTGCTGCTGCTGACCCTTTTGCTAGTGCTGGTGGAGCTGATGAAGATGACCTTTACAGTTAG 2433 0.4386 MANQPQPESSDSKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPETMEKLQLFRGDTILIKGKKRKDTICIALADDTCDEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIECDPQEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLEKIAKETHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFHTALGSSNPSALRETVVEVPNCSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAALRKSPIAKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSDNPEAMEEDNEDDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADTSAGGTTTAAADPFASAGGADEDDLYS 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00867 810 SUPERFAMILY Cdc48 domain 2-like 114 206 IPR029067 -
Vifa3g00867 810 MobiDBLite consensus disorder prediction 786 810 - -
Vifa3g00867 810 Pfam Cell division protein 48 (CDC48), N-terminal domain 32 113 IPR003338 -
Vifa3g00867 810 PANTHER AAA-FAMILY ATPASE 446 772 - -
Vifa3g00867 810 ProSitePatterns AAA-protein family signature. 347 365 IPR003960 GO:0005524|GO:0016887
Vifa3g00867 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 767 IPR027417 -
Vifa3g00867 810 FunFam Transitional endoplasmic reticulum ATPase 208 376 - -
Vifa3g00867 810 Gene3D - 470 653 IPR027417 -
Vifa3g00867 810 Gene3D - 657 766 - -
Vifa3g00867 810 CDD RecA-like_CDC48_r2-like 491 651 - -
Vifa3g00867 810 FunFam Transitional endoplasmic reticulum ATPase 9 114 - -
Vifa3g00867 810 SMART CDC48_N_2 32 115 IPR003338 -
Vifa3g00867 810 SMART CDC48_2_2 132 198 IPR004201 -
Vifa3g00867 810 NCBIfam CDC48 family AAA ATPase 33 770 IPR005938 GO:0016787
Vifa3g00867 810 FunFam Transitional endoplasmic reticulum ATPase 470 653 - -
Vifa3g00867 810 Pfam ATPase family associated with various cellular activities (AAA) 520 653 IPR003959 GO:0005524|GO:0016887
Vifa3g00867 810 Pfam ATPase family associated with various cellular activities (AAA) 247 376 IPR003959 GO:0005524|GO:0016887
Vifa3g00867 810 SMART AAA_5 243 379 IPR003593 GO:0016887
Vifa3g00867 810 SMART AAA_5 516 655 IPR003593 GO:0016887
Vifa3g00867 810 ProSitePatterns AAA-protein family signature. 623 641 IPR003960 GO:0005524|GO:0016887
Vifa3g00867 810 Pfam Cell division protein 48 (CDC48), domain 2 134 197 IPR004201 -
Vifa3g00867 810 FunFam Cell division control 48 378 469 - -
Vifa3g00867 810 CDD RecA-like_CDC48_r1-like 211 376 - -
Vifa3g00867 810 Gene3D - 212 376 IPR027417 -
Vifa3g00867 810 FunFam Cell division control 48 115 211 - -
Vifa3g00867 810 Pfam AAA+ lid domain 399 441 IPR041569 -
Vifa3g00867 810 Pfam AAA+ lid domain 675 715 IPR041569 -
Vifa3g00867 810 Gene3D - 378 469 - -
Vifa3g00867 810 Gene3D - 9 114 - -
Vifa3g00867 810 MobiDBLite consensus disorder prediction 714 734 - -
Vifa3g00867 810 SUPERFAMILY ADC-like 29 112 IPR009010 -
Vifa3g00867 810 Gene3D - 115 211 - -
Vifa3g00867 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 468 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00867 Vifa-Chr3 213403498 213407413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00867 449 712 Calmodulin-binding Proteins AT3G56690 46.970 8.94e-79 273