Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00861 ATGACTTCACAAGTAGCTCTCCACACATTCTCTCAACCAGACACCAAAACTTCCACCGCCGTAACCGCCGTAACCGCCACCGACTCCGATCCCAATCTCCATCTCTCCACCGTTCGTAGAACCTCCACCACCGCCTCACGATCCACCAAAGACCGTCATACCAAAGTTAACGGCCGTGGTCGCCGTGTCCGTATGCCGCCTCTCTGCGCCGCCAGGATATTCCAGCTTACACGCGAACTCGGCCACCGCTCCGACGGTGAAACCATCGAGTGGCTCCTCCGACACGCTGAGCCGTCTATTATCGCGGCCACTGGGACTGGCACTGTCCCCGCTGATCCAGTTTCAGCCGTCTCCGCCGTTTCTTCCTCATCCGCGCCGTCTGTTTCCTGTAATGTTCATCCGTTGTCTTCGGTTGGTCACGTTAGTCAAGGCGTGTTTGCTGCGGTACAGCAGCCCAGCTGCCGGCTTGATCTCTGTCAGCCGACTGGGATGGAATACGCGGCGGAGAACAGATACCGTCACATGCCTTTCACGGCGTTGTTGTTGCAACCCACTACGGTGGAGGAGAATCAGCAAGAAGAAGCACGGAGTGAACAATGA 600 0.5717 MTSQVALHTFSQPDTKTSTAVTAVTATDSDPNLHLSTVRRTSTTASRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPADPVSAVSAVSSSSAPSVSCNVHPLSSVGHVSQGVFAAVQQPSCRLDLCQPTGMEYAAENRYRHMPFTALLLQPTTVEENQQEEARSEQ 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00861 199 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 137 IPR005333 GO:0003700
Vifa3g00861 199 ProSiteProfiles TCP domain profile. 49 103 IPR017887 -
Vifa3g00861 199 Pfam TCP family transcription factor 48 153 IPR017887 -
Vifa3g00861 199 MobiDBLite consensus disorder prediction 39 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00861 Vifa-Chr3 212391736 212392335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00861 49 186 TCP Transcription Factor Family AT2G37000 58.696 9.50e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa3g00861 TCP 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00861 - - cam:101510590 274.633