Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00860 ATGGATCGGGAAGAATATCTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTGGATGAATCATACGTGCCTTCCTTTCAAGATGATGGGATGGAAATTGAGCATTTGCTTGAAGAACCTAGAAGTGATCATGTTTCATTGGATGGCAGTTTAGCTTCTGACACAGCTTTGACAGACAAGAATGATTTGGAACTGGAGGTCCTTGATGGATTCCTGGGTGAGGGATTCCTGGATGATGTTGACATCAATGATCTTGAAGGAGCTGATGGTTTCACCGATGTATCTGGAGGGTATTTCTTAGATTTTGATTTTGCCAAAGTTGAGTTACTAGGCTCCGGTGCTTATGAAGACTCACTTTTGGAAAACTCAAATTCGGAAAGTCAATCTCCAGGATTAAGTGGAAGTAGCACTGTTGGTGGAATATCAGAATCAGCAAAAGCACCCAATAGTACACTATCTGAATGCAAAATTGAATCTCTAGAGGAGACAGTCACCCATGATACACATGGTGTTTTCAGGAACAATCCAAGTCAACCATCAAATGTGGCAGTATGTTGTCTTGTAAGACAGAAAATGTTACTGTTGAAAATTGCCAATCTGCTCCACCTAGAGAGAAGAGATTCCGAAAGCCTACTAAGAGGATTGAAGAATATTCCAAGTGAAAAGTCTAGTAATGGTAATAGTGATGTAACGCCTACCGAGTTGCAACGCTGCAAGAAGCTGCCAAAGAAAGAGGAACTTGAGTATGACAATGAGTCTTTTTCCTCGGAGGAGTTTGAGGACGAGTTTGAGGAAGAGTTTGAGGATGAACGTTCGCCACCAAAAAGAAGTAGATCAAAAGATCGAAGAAAGCATCAAAGGATGTGGACAACCGCCGAAGTGACGAAGTTGGTTGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGATTTCTATTTTCGGCTTCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAACCTTCTCCGAGCCAGTTCTGCACAGAAATTCATCCAGAAAGAGGGTGAGGAAAATGACAAGATTGCCCCGAGGGCCTTACCTTTCAGTGTGGCAAGCCGAGTGCTGGAATTGGCTAAAATTCACCCATACCCAAAGCGACGAAACTCGAAGAGATCGTTTGATAGTCAAGTCGGCTCTTCTGTCACAGCCAGTCAAAGCAGTGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTCCGTAGGAAGAATTGTACTTAG 1257 0.4312 MDREEYLRKCSNMKCQRVDESYVPSFQDDGMEIEHLLEEPRSDHVSLDGSLASDTALTDKNDLELEVLDGFLGEGFLDDVDINDLEGADGFTDVSGGYFLDFDFAKVELLGSGAYEDSLLENSNSESQSPGLSGSSTVGGISESAKAPNSTLSECKIESLEETVTHDTHGVFRNNPSQPSNVAVCCLVRQKMLLLKIANLLHLERRDSESLLRGLKNIPSEKSSNGNSDVTPTELQRCKKLPKKEELEYDNESFSSEEFEDEFEEEFEDERSPPKRSRSKDRRKHQRMWTTAEVTKLVDGISEYGVGRWTDIQRFLFSASGYRTPTDIRDKWRNLLRASSAQKFIQKEGEENDKIAPRALPFSVASRVLELAKIHPYPKRRNSKRSFDSQVGSSVTASQSSGSSISLGRRNVRRKNCT 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00860 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 281 340 IPR017930 -
Vifa3g00860 418 CDD SANT_TRF 287 337 - -
Vifa3g00860 418 ProSiteProfiles Myb-like domain profile. 281 336 IPR001005 -
Vifa3g00860 418 MobiDBLite consensus disorder prediction 251 268 - -
Vifa3g00860 418 MobiDBLite consensus disorder prediction 387 418 - -
Vifa3g00860 418 MobiDBLite consensus disorder prediction 120 153 - -
Vifa3g00860 418 MobiDBLite consensus disorder prediction 217 236 - -
Vifa3g00860 418 Pfam Myb-like DNA-binding domain 289 336 IPR001005 -
Vifa3g00860 418 MobiDBLite consensus disorder prediction 217 234 - -
Vifa3g00860 418 SUPERFAMILY Homeodomain-like 283 344 IPR009057 -
Vifa3g00860 418 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 7 278 - -
Vifa3g00860 418 MobiDBLite consensus disorder prediction 246 286 - -
Vifa3g00860 418 Gene3D - 275 387 - -
Vifa3g00860 418 SMART sant 285 338 IPR001005 -
Vifa3g00860 418 MobiDBLite consensus disorder prediction 379 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00860 Vifa-Chr3 210266950 210272577 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa3g00860 Myb_DNA-binding 2.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00860 - - lja:Lj5g3v0659660.2 348.591