Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00859 ATGGATCGGGAAGAATATCTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTGGATGAATCATACGTGCCTTCCTTTCAAGATGATGGGATGGAAATTGAGCATTTGCTTGAAGAACCTAGAAGTGATCATGTTTCATTGGATGGCAGTTTAGCTTCTGACACAGCTTTGACAGACAAGAATGATTTGGAACTGGAGGTCCTTGATGGATTCCTGGGTGAGGGATTCCTGGATGATGTTGACATCAATGATCTTGAAGGAGCTGATGGTTTCACCGATGTATCTGGAGGGTATTTCTTAGATTTTGATTTTGCCAAAGTTGAGTTACTAGGCTCCGGTGCTTATGAAGACTCACTTTTGGAAAACTCAAATTCGGAAAGTCAATCTCCAGGATTAAGTGGAAGTAGCACTGTTGGTGGAATATCAGAATCAGCAAAAGCACCCAATAGTACACTATCTGAATGCAAAATTGAATCTCTAGAGGAGACAGTCACCCATGATACACATGGTGTTTTCAGGAACAATCCAAGTCAACCATCAAATGTGGCAGTATGTTGTCTTGTAAGACAGAAAATGTTACTGTTGAAAATTGCCAATCTGCTCCACCTAGAGAGAAGAGATTCCGAAAGCCTACTAAGAGGATTGAAGAATATTCCAAGTGAAAAGTCTAGTAATGGTAATAGTGATGTAACGCCTACCGAGTTGCAACGCTGCAAGAAGCTGCCAAAGAAAGAGGAACTTGAGTATGACAATGAGTCTTTTTCCTCGGAGGAGTTTGAGGACGAGTTTGAGGAAGAGTTTGAGGATGAACGTTCGCCACCAAAAAGAAGTAGATCAAAAGATCGAAGAAAGCATCAAAGGATGTGGACAACCGCCGAAGTGACGAAGTTGGTTGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGATTTCTATTTTCGGCTTCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAACCTTCTCCGAGCCAGTTCTGCACAGAAATTCATCCAGAAAGAGGGTGAGGAAAATGACAAGATTGCCCCGAGGGCCTTACCTTTCAGTGTGGCAAGCCGAGTGCTGGAATTGGCTAAAATTCACCCATACCCAAAGCGACGAAACTCGAAGAGATCGTTTGATAGTCAAGTCGGCTCTTCTGTCACAGCCAGTCAAAGCAGTGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTCCGTAGGAAGAATTGTACTTAG 1263 0.4315 MDREEYLRKCSNMKCQRVQVDESYVPSFQDDGMEIEHLLEEPRSDHVSLDGSLASDTALTDKNDLELEVLDGFLGEGFLDDVDINDLEGADGFTDVSGGYFLDFDFAKVELLGSGAYEDSLLENSNSESQSPGLSGSSTVGGISESAKAPNSTLSECKIESLEETVTHDTHGVFRNNPSQPSNVAVCCLVRQKMLLLKIANLLHLERRDSESLLRGLKNIPSEKSSNGNSDVTPTELQRCKKLPKKEELEYDNESFSSEEFEDEFEEEFEDERSPPKRSRSKDRRKHQRMWTTAEVTKLVDGISEYGVGRWTDIQRFLFSASGYRTPTDIRDKWRNLLRASSAQKFIQKEGEENDKIAPRALPFSVASRVLELAKIHPYPKRRNSKRSFDSQVGSSVTASQSSGSSISLGRRNVRRKNCT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00859 420 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 7 280 - -
Vifa3g00859 420 MobiDBLite consensus disorder prediction 219 236 - -
Vifa3g00859 420 MobiDBLite consensus disorder prediction 248 288 - -
Vifa3g00859 420 MobiDBLite consensus disorder prediction 381 420 - -
Vifa3g00859 420 MobiDBLite consensus disorder prediction 389 420 - -
Vifa3g00859 420 Pfam Myb-like DNA-binding domain 291 338 IPR001005 -
Vifa3g00859 420 CDD SANT_TRF 289 339 - -
Vifa3g00859 420 MobiDBLite consensus disorder prediction 253 270 - -
Vifa3g00859 420 SUPERFAMILY Homeodomain-like 285 346 IPR009057 -
Vifa3g00859 420 Gene3D - 277 389 - -
Vifa3g00859 420 SMART sant 287 340 IPR001005 -
Vifa3g00859 420 MobiDBLite consensus disorder prediction 122 155 - -
Vifa3g00859 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 283 342 IPR017930 -
Vifa3g00859 420 MobiDBLite consensus disorder prediction 219 238 - -
Vifa3g00859 420 ProSiteProfiles Myb-like domain profile. 283 338 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00859 Vifa-Chr3 210266950 210272577 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa3g00859 Myb_DNA-binding 2.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00859 - - gmx:100810255 382.489