Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00858 ATGAGGAATCATGTTTTCTACATTGCTATCTTTTTCCTATTCTCTTTCGCTTTCTTACCGAGGGTTCATTGTGCCGAAGGAACTTTTGCACCTTCCTTTTACACCGGTGAAATCTACAAGGAACTTCAGAATATCGCTATTCTTTTGAATAAGGATATTAAATCAAGTTTAGATTTCTGCATTAAGGACCCGAAAAAAGATTGGGAAGAAGCTTTTGATTTTACGGGAAGGTTGGACTTTGTTGATTCTTGTGTTAAGAAAAAAGGAGATTTCAGGGATCGTATATGTACTGCAGCTGAAATAAGGTACTACTTCCATGGTTTCTTGGCACAGGGAGCAGCTACAGACAACTATGTAAAACCTAACAAGAATTGCAATTTGACCTCATGGGTTTCTGGTTGTGAACCTGGATGGGGTTGTAGTACGGGCAATAATATTGACCTAAGAAAGGACACAAAGGAAATTCCAAACAGAACCAAAAACTGTAAACCTTGTTGTGAGGGTTTTTTCTGTCCTCAAGGATTGACTTGTATGATACCTTGCCCGCTAGGTTCTTATTGCCCAGTTGCAAAACTGAACAATGAGACTGGACTATGTGACCCATATAGTTACCAGATACCTCAAGGAGAAACAAAACATACTTGCGGCAGTGCTGATATTTGGACTGGTGTGGTGAACAATAGTGACATATTCTGTTCTCCCGGATCATACTGCCCAACTACAACACGTAAAGTTTCTTGTGATCGTGGATATTACTGCAGGATGGGCTCTACTCATCAGAATCCATGCTCCAAGTTCAGCCAATGTAATCCAAACACAACGACCCAAAATATGCATGCTTATGGCGCTCTGCTTATTGTTGCATTGAGTACTGTCTTGATCTTCATTTATAACTGTTCTGATCAAGTTCTAGCTACTCGAGAAAGAAGGAAAGCTAAATCCAGAGAGGCAGCAGCAAGACAGGTAAGAGAAACTGTACAAGCTCGAGAAAGGTGGAAGATAGCAAAAGATGCTACTAAAAGGAATAAGACAGGATTGCAAGATCAGCTAGTGCGCACTTTTTCTCGCAGAAAATCAACAAAGCAAGGAGAGCAAGTTAATCCTGCTACAGGCAATCCAGTTTTGCCACCTATGCCTCCAGAACAACCATCTGCAGCCACAAAGGAACCTAGTAACCTTACTAAAATGATGAATTCCCTTGAGAATGACCCTAATAGTAATGAAGGATTCAATCTAAAGATTGGGGACAAAAATATTAAAAAACAATTGCCTAAGGGAAAAAACTTACATACACAGAGCCAAATTTTAAGGTATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAACAGGACAAAAATAACTTGACCTTCTCAGGAGTGATTTCAATGGCCGCCGATGGTGAGGAGGGTAGATCGAGGCCTGAGATCGAGGTAGCTTTCAAAGATTTAACCCTTACTTTGAAAGGGAAAAAAAAACATGTAATGAGGTGTGTGACAGGTAAAATCATGCCTGGTCGAGTTTCAGCTGTGATGGGTCCTTCAGGAGCTGGAAAAACTACATTTCTGTCTGCTCTGGCAGGGAAAATAAGAGGATGCACCATGACAGGCTCAATTCTAATCAATGGAAAAGCTGAATCCATTCACTGTTACCAGAAAATTATTGGATATGTGCCGCAAGATGATATTGTGCATGGGAACTTGACAGTGGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGACTATCTGATGACCTGCCAAAACCAGATAAGGTTCTGATTGTTGAAAGAGTAATTGAAACCTTGGGACTTCAGGGAATAAGAGATTCCCTTGTTGGAACAGTAGAGAAGCGAGGCATATCTGGTGGGCAACGAAAACGTGTAAATGTAGGGTTGGAGATGGTTATGGAGCCTTCATTGTTAATCTTAGATGAGCCTACAACTGGTTTGGACAGTGCATCTTCCTCTTTACTGCTGAAAGCACTTCGTCGTGAAGCTGCTGAAGGGGTAAACGTCTGCATGGTACTTCACCAACCAAGCTATACTTTGTTCAGAACGTTTGATGATATAATATTTCTAGCAAAAGGTGGTCTCACTGCATATCACGGACCTGTAAAAAAAGTAGAAGAATACTTCGCTGGCATTGGAATCGTTGTTCCTGATCGTGTGAATCCTCCAGACCATTATATTGACATTTTGGAAGGTTTAGTGAAACCAAATGAAGGTGTGACTCATCAACAACTACCTGTGAGATGGATGCTTCATAACGGTTACCCAGTACCACCAGATATGCTTCATTTTGCTGATGAAATTTCTGCTTCATCATCTTCCACAAATATAAATCATGCAACTAAGACTACCGACGAGGCTACTGATCAATCATTTGCTGGAGAGTTCTGGGAGGATATGAAAAGTAACGTGCAGTTGCAAAAAGATCAAATAGAGGCAACCTTCTTAACGACTAAGGATTTATCAAACCGAAGAACGCCTGGTATAAGTCGCCAGTATAGATACTACGTTGGGCGGGTTGGTAAGCAGCAGCTTCGAGAAGCAAAGGCACAAGCAGTTGATTATCTCCTTTTATTAGTTGCTGGTGCTATATTAGGAACTCTTACCAAAGTAAATGATGAAACATTTGGGTCTCTTGGATATACATATACTGTCATTGCTGTTTCTCTACTTTGCAAGATTGCAGCTTTGAGATCATTTTCTATGGATAAATTACAATACTGGAGGGAGAGTGCATCAGGGATTAGTAGTCTAGCTCATTTTTTATCCAAAGATACAATTGATCTTTTCAGTACATTAGTCAAACCTCTTGTTTACCTATCCATGTTCTACTTCTTTAGCAATCCAAGGTCAAGCTTCGGAAGTAATTACGCGGTTTTGGTGTGCCTTGTGTATTGTGTAACTGGCATGGCTTATGCATTAGCAATTTATTTCGAGCCTGCTCCTGCTCAGCTGTGGTCAGTGCTTCTCCCTGTTGTTATGACTCTCATTTCAAACCAGAAAAGAGATACTCTCTCTATGAAAATCCTTATAAAAATGTGTTACCCAAATTGGGCTTTGGAGGCCTTTATTATTGCAAATGCTGAAAGGTACACTGGGGTGTGGTTGATAACTCGTTGTAGTTCACTGATGAATAGCAGTTATAACGTCAATGATTGGCCTATATGTCTAGCTGTTCTCATTTTTTATGGTATAGTTGCCCGAATTGTGGCGTTCATTTGTCTCATGATCACCCAAAAGAAGTGA 3252 0.4053 MRNHVFYIAIFFLFSFAFLPRVHCAEGTFAPSFYTGEIYKELQNIAILLNKDIKSSLDFCIKDPKKDWEEAFDFTGRLDFVDSCVKKKGDFRDRICTAAEIRYYFHGFLAQGAATDNYVKPNKNCNLTSWVSGCEPGWGCSTGNNIDLRKDTKEIPNRTKNCKPCCEGFFCPQGLTCMIPCPLGSYCPVAKLNNETGLCDPYSYQIPQGETKHTCGSADIWTGVVNNSDIFCSPGSYCPTTTRKVSCDRGYYCRMGSTHQNPCSKFSQCNPNTTTQNMHAYGALLIVALSTVLIFIYNCSDQVLATRERRKAKSREAAARQVRETVQARERWKIAKDATKRNKTGLQDQLVRTFSRRKSTKQGEQVNPATGNPVLPPMPPEQPSAATKEPSNLTKMMNSLENDPNSNEGFNLKIGDKNIKKQLPKGKNLHTQSQILRYAYGQIEKEKAQQDKNNLTFSGVISMAADGEEGRSRPEIEVAFKDLTLTLKGKKKHVMRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKIRGCTMTGSILINGKAESIHCYQKIIGYVPQDDIVHGNLTVEENLRFSARCRLSDDLPKPDKVLIVERVIETLGLQGIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREAAEGVNVCMVLHQPSYTLFRTFDDIIFLAKGGLTAYHGPVKKVEEYFAGIGIVVPDRVNPPDHYIDILEGLVKPNEGVTHQQLPVRWMLHNGYPVPPDMLHFADEISASSSSTNINHATKTTDEATDQSFAGEFWEDMKSNVQLQKDQIEATFLTTKDLSNRRTPGISRQYRYYVGRVGKQQLREAKAQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKIAALRSFSMDKLQYWRESASGISSLAHFLSKDTIDLFSTLVKPLVYLSMFYFFSNPRSSFGSNYAVLVCLVYCVTGMAYALAIYFEPAPAQLWSVLLPVVMTLISNQKRDTLSMKILIKMCYPNWALEAFIIANAERYTGVWLITRCSSLMNSSYNVNDWPICLAVLIFYGIVARIVAFICLMITQKK 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00858 1083 ProSitePatterns ABC transporters family signature. 619 633 IPR017871 GO:0005524|GO:0016887
Vifa3g00858 1083 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 478 719 IPR003439 GO:0005524
Vifa3g00858 1083 Gene3D - 466 713 IPR027417 -
Vifa3g00858 1083 FunFam ABC transporter G family member 24 472 714 - -
Vifa3g00858 1083 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 236 1070 - -
Vifa3g00858 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 701 IPR027417 -
Vifa3g00858 1083 SMART AAA_5 504 696 IPR003593 GO:0016887
Vifa3g00858 1083 Pfam ABC transporter 498 646 IPR003439 GO:0005524
Vifa3g00858 1083 Pfam ABC-2 type transporter 676 1083 IPR043926 GO:0140359
Vifa3g00858 1083 CDD ABCG_EPDR 476 702 - -
Vifa3g00858 1083 MobiDBLite consensus disorder prediction 355 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00858 Vifa-Chr3 210194209 210199529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00858 505 698 Calmodulin-binding Proteins AT2G36910 28.713 4.23e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00858 - - gmx:100812387 1848.17