Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00857 ATGAATTGTTTTCCATTCAACATCTACTATGGAGAAAAGAAAGGTGATGCAAAGAGCTTGCAGACACTATCGGGTCTCTCGAACAACTCTACTTATGGAGGGAGTGACATGAGAAGAACTGGTTCTGAATTAAATTCTCTGGATGCCTCATCAGACAATAGCTCAGACTCCCTCAGGAGGAATGCATTTCCTAATTTGTCCCAAAGACCTAGCAACCTGAGAGTATTTACCGTGTCTGAACTCAAATCAGCCACCAAGAATTTTGGTCGTTCTGTTATGCTTGGTGAGGGTGGATTTGGGTGTGTCTACAAGGGAGTCATCAAGACTTTAGATGACCCCCCTAGTAAAATTGAAGTTGCAGTTAAACAACTTGGTAAAAGAGGAATTCAGGGGCATAAAGAATGGGTAACTGAAGTGAATGTTCTAGGTATCGTTGAGCATCCCAATCTTGTGAAACTAGTGGGATATTGTGCTGATGATGATGAAAGGGGAATCCAACGGCTTTTGATATATCAATATATGCCCAATGGGAGCGTGGAACACCATTTATCCCCACGATCTGAAACTCCTCTCTCATGGAGTAGGAGACTGAAAATAGCTCAAGATGCTGCTCGCGGCTTAACATACCTGCACGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGACGAGCAGTGGAATGCGAAGCTGTCAGACTTTGGATTAGCAAGATTGGGACCTTCTGATGGGTTAACTCATGTCTCGACAGCGGTTGTAGGAACAATGGGCTATGCAGCTCCTGAATATATTCAAACAGGACGTCTCACTTCAAAGATTGATGTATGGAGCTACGGTGTCTTCCTTTATGAACTCATTACTGGCAGGCGTCCTTTAGATCGAAATCGCCCCAAGGGTGAGCAGAAGTTGTTGGACTGGATAAGACCATACCTTTCAGATGTGAAGAAATTTCAAATAATATTGGATCCAAGACTCGAGAGGAAACACATCTCAAAGTCAGCCCAAAAACTTGCTTTATTAGCTAACAGATGCTTGGTGAGAAACCCAAAGAATCGCCCAAAGATGAGCGAAGTATTAGAAATGGTTAATCAGATTGTAGAGTTTTCGGCGAGTACTATTCCACAACCATCCATGAATAGTGTAGCCTCAGCCGATGATTCTCAAAACACTGAAATCAAAAACAAGAAGAGGATCATGGATCCAAAACCTGATTGTAATTGGTTTAGGTCCTGGAGGCCAAAGCTTTTGCGAACATGCTGA 1281 0.4231 MNCFPFNIYYGEKKGDAKSLQTLSGLSNNSTYGGSDMRRTGSELNSLDASSDNSSDSLRRNAFPNLSQRPSNLRVFTVSELKSATKNFGRSVMLGEGGFGCVYKGVIKTLDDPPSKIEVAVKQLGKRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYQYMPNGSVEHHLSPRSETPLSWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKIDVWSYGVFLYELITGRRPLDRNRPKGEQKLLDWIRPYLSDVKKFQIILDPRLERKHISKSAQKLALLANRCLVRNPKNRPKMSEVLEMVNQIVEFSASTIPQPSMNSVASADDSQNTEIKNKKRIMDPKPDCNWFRSWRPKLLRTC 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00857 426 FunFam Serine/threonine-protein kinase PCRK2 174 382 - -
Vifa3g00857 426 Gene3D Transferase(Phosphotransferase) domain 1 174 395 - -
Vifa3g00857 426 Gene3D Phosphorylase Kinase; domain 1 61 173 - -
Vifa3g00857 426 FunFam Serine/threonine-protein kinase BIK1 55 173 - -
Vifa3g00857 426 ProSitePatterns Protein kinases ATP-binding region signature. 94 122 IPR017441 GO:0005524
Vifa3g00857 426 CDD STKc_IRAK 94 372 - -
Vifa3g00857 426 SUPERFAMILY Protein kinase-like (PK-like) 65 369 IPR011009 -
Vifa3g00857 426 Pfam Protein kinase domain 92 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00857 426 PANTHER OS01G0588500 PROTEIN-RELATED 55 372 - -
Vifa3g00857 426 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00857 426 MobiDBLite consensus disorder prediction 24 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00857 Vifa-Chr3 210141389 210143469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00857 1 398 Glycoside Hydrolase AT3G07070 40.648 1.81e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa3g00857 Pkinase 6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00857 - - gmx:100305438 693.345