Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00824 ATGTCGCCCTTAATCAAAAAACTTCTCTTGTTGTTGTGTTTGTTGACGTTAATATCTATCAACAATGTTGAAGGAAAGATACATGTGAAGATTGCTAACCTTTTGCAAGACAAATCAAATTTAACAGTTCATTGCAAATCTAAAGATGACGATGTTGGATCTAATCTTCTTCAGTATAGTGACAGTTATAATTTTCAATTTAATGAAAATATCTTTGGAAGCACGCTATTTTTCTGTTCCTTTGAGTGGAAGGATCAGTTTCAATGGTTTGATATTTACATTTCAACGAGGGATTCTGGTGTGGAAAAACAAAAACCAGTAGAGACTTGGAAGGAGAAATCTCAGTCGTGTAATCAGGTTAGAGAAATAGGTGGGGCGACAAAAGAGTTGAGCACCGTCCCCAAAGCTCTAGATATTGAGGTTGTTGATACAAATGAAAGCTCTGAAACTGATTTTTTGGATGCCACTCAGGTGGATGAAATTGTTGAAGAAACTCAAGTGTGGAGTTTCTGTTAA 516 0.3585 MSPLIKKLLLLLCLLTLISINNVEGKIHVKIANLLQDKSNLTVHCKSKDDDVGSNLLQYSDSYNFQFNENIFGSTLFFCSFEWKDQFQWFDIYISTRDSGVEKQKPVETWKEKSQSCNQVREIGGATKELSTVPKALDIEVVDTNESSETDFLDATQVDEIVEETQVWSFC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00824 171 Pfam Plant self-incompatibility protein S1 28 114 IPR010264 -
Vifa3g00824 171 PANTHER - 24 116 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00824 Vifa-Chr3 195584626 195586765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00824 26 98 Carbohydrate Esterase AT3G16970 42.466 1.19e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00824 - - cam:101506408 107.457