LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g00821	ATGGGTCGTGTCAGAACCAAAACTGTTAAGAAATCCTCCCGTCAAGTCATTGAACGTTACTACTCCCGCATGACCCTGGATTTTCACACCAACAAGAAAATCCTGGAGGAAGTCGCACTCATTCCCACCAAGAGACTCCGCAACAAGATCGCTGGATTTTCTACTCATCTCATGAAGAGGATTCAGAAGGGACCCGTTCGTGGAATCTCGTTGAAGCTGCAGGAGGAGGAGCGTGAGAGGCGTATGGATTTCGTTCCTGATGTTTCTGCTATCAGGACTGATCATATTGAAGTGGACAAGGAAACCCTAGACATGCTTGCTGCTCTTGGGATGTCCGAGATTCCCGGTGTTGTTCAGGTGGATCCGGTTCCTGTTCAGCCGATTCCGTTCGGTCGTGGTGGTGCAGCTGCTGGTGGACCTGGTGGAAGGAGGTTTTGA	438	0.5046	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPTKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDHIEVDKETLDMLAALGMSEIPGVVQVDPVPVQPIPFGRGGAAAGGPGGRRF	145

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g00821	145	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Vifa3g00821	145	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Vifa3g00821	145	FunFam	40S ribosomal protein S17	1	62	-	-
	Vifa3g00821	145	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Vifa3g00821	145	PANTHER	40S RIBOSOMAL PROTEIN S17	1	122	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Vifa3g00821	145	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Vifa3g00821	145	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g00821	Vifa-Chr3	192586245	192586682	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g00821	1	145	Cytoplasmic Ribosomal Protein Gene Family	AT2G04390	78.767	6.28e-77	223

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g00821	K02962		-	gmx:100819067	234.187