Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00806 ATGTCCGGTGGCGCTGGAGCTTCCGACCGTGGCTCGCCGAGGGAGCCTGCCGGAGGAACGAGTAGGCCGCCGTTGAAGCGTCATCTGGCGTTTGTCTCGACGAAGCCTCCATTTGCACCGATGGATGAGTATCACAGTTTTGCCGCCGTTGATTCTCGGAAAGTCGCCGATCACGTGACGGAAGCAGTTGTTATCAGATCTCCGGTCATAAAGCGTAAGAATGGAATGAATGAAAGTGAAGGAGAGTCACAAAAGTGGACTAACAGCCCTGGGTACACTAATGTAACCAATAGTAGCCCGTTTAAAACTCCATTGTCTGCAAAAGATGGAAGGACAAACAAGTCAAGGGTTTCCAAAGAAGGCAAATCATGTCCTCCAACACCTATCTCAAATGCTGGTTCCCCTTCCCCTCTTACTCCTGCTGGTAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGATCAAGCGTGCAGAGGATGGCATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAATCTCAAGAACAGAATACATTGGAAAGGAATTGAATCTTCTACGCCTGGTAGTATGGATGGTGATATCTCTATGCTTAAGTCGGAAGTTGAAAAACTTTCTTTGGATGAGCAGAGTCTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGAGGTTTGAGTGAAGATGAAAATAACCAGAAGTTCCTTTTTGTGACCGAGGAAGATATTAAGGGCCTACCTTGCTTCCAGCAGAATGAAACTTTGATAGCAATCAAAGCTCCACATGGAACCACCTTGGAAGTCCCTGATCCTGAGGAAGCCGTTGACTATCTACAGAGGAGATATAGAATCATTCTTAGGAGCACAATGGGTCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGGTGCTGAGCCCCCCGTGAGCTTACCTCTTGCTTCAAGTTCAGGGTCTAATGAGCAACAAGTGACGGAAATGGTTCCTGCTGAATGCAGTGGTAACGGACTTGAACCTCAAGCTCTCCTCTCTTCCCAGACATACTCTGATCTAAATGCTTCCCAAGAGCTTCCTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCTGATTATTGGCTTCTATCAGATGCTGAAGTTAGCATAACAGATATGTGGAGAACAGATTCTAATGTTGATTGGAGTGGAGTGGACATGCTTCATCCTGACTTTGAAATGATCTCGAGGCCACAAACTCCATCGCCTGGACTTGCGGAAGCACCACCAACTGTAGCTAACCCTAATCAGAGCCTTGTGATTGTTGAGGATGCTGTCGGAGCTGTTGAGTGTTAA 1443 0.4525 MSGGAGASDRGSPREPAGGTSRPPLKRHLAFVSTKPPFAPMDEYHSFAAVDSRKVADHVTEAVVIRSPVIKRKNGMNESEGESQKWTNSPGYTNVTNSSPFKTPLSAKDGRTNKSRVSKEGKSCPPTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLIKRAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKNLKNRIHWKGIESSTPGSMDGDISMLKSEVEKLSLDEQSLDDQIREMQERLRGLSEDENNQKFLFVTEEDIKGLPCFQQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEPPVSLPLASSSGSNEQQVTEMVPAECSGNGLEPQALLSSQTYSDLNASQELPGGMMKIVPSDADNDADYWLLSDAEVSITDMWRTDSNVDWSGVDMLHPDFEMISRPQTPSPGLAEAPPTVANPNQSLVIVEDAVGAVEC 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00806 480 SUPERFAMILY E2F-DP heterodimerization region 223 328 IPR037241 -
Vifa3g00806 480 SUPERFAMILY "Winged helix" DNA-binding domain 145 208 IPR036390 -
Vifa3g00806 480 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667|GO:0006355
Vifa3g00806 480 MobiDBLite consensus disorder prediction 74 140 - -
Vifa3g00806 480 Pfam E2F transcription factor CC-MB domain 226 327 IPR032198 GO:0046983
Vifa3g00806 480 Coils Coil 230 257 - -
Vifa3g00806 480 CDD E2F_DD 226 328 IPR032198 GO:0046983
Vifa3g00806 480 PANTHER TRANSCRIPTION FACTOR E2F 77 429 IPR015633 GO:0000978|GO:0006357
Vifa3g00806 480 Gene3D - 218 328 - -
Vifa3g00806 480 FunFam E2F transcription factor 1 139 212 - -
Vifa3g00806 480 MobiDBLite consensus disorder prediction 124 140 - -
Vifa3g00806 480 MobiDBLite consensus disorder prediction 80 111 - -
Vifa3g00806 480 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667|GO:0006355
Vifa3g00806 480 MobiDBLite consensus disorder prediction 1 28 - -
Vifa3g00806 480 Coils Coil 161 181 - -
Vifa3g00806 480 Gene3D - 139 212 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00806 Vifa-Chr3 187408058 187414528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00806 23 463 E2F-DP Transcription Factor Family AT2G36010 57.296 9.40e-168 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vifa3g00806 E2F_CC-MB 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00806 K06620 - gmx:100811762 740.339