Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00794 ATGTCAAATCAACTCAACGGCGCTTACTACGGCCCTTCCATCCCGCCGCCGCAACCCCACCGTCGTCACCGCAACGACTCCTCCTGCGGCTTCTGCAGCTGCCTCTGCGGCTGCTTCCGCGGCTGTTGCGGCTGCATCTTCAACTGCATACTGAGCATCATCTGCAAAATCCTCACCACAATCCTTATCATCGTCGTAATCCTCGGCTTCCTCTTCTGGCTCATCGTCCGTCCTAACGTCGTCCACTTCACCGCCACCGATGCATCTCTTTCTCAATTCAATTTCACCAAAAACAACGCACTTCACTACGATCTCACCGTCAACATCACAATCCGAAACCCTAACCGCCGCGTCGGAATCTATTACGATAGCATCGAAACGGTTGCGTTTTATAAAGATGTTGCGTTTGGGAATCAAACGCTACCGGGATTCTTTCAGCATCATAAGAGTACGAATTTCTTGAACCCTGTTTTCAAAGGTGAACAAGTGATTCTGTTGAGTTCAGATCAGGTTTCGGAGTTTGACAAAGAGAAGGAAAATGGAGTTTATGGAATCAATGTGAAGGTTTTGATGAATGTGAGGTTTAAATTGGGTTTGTTTAAGTCAGGGAAAGCGAAACCTAAGGTTCGTTGTAATTTGCAGGTTCCTCTGAAATCAAACAATGGAAGTTCTTTGAGTAATGCGTTTCAAGTTACTGAGTGTGATTGGGATTATAAATGGAGATTGTTCCATTAG 735 0.4599 MSNQLNGAYYGPSIPPPQPHRRHRNDSSCGFCSCLCGCFRGCCGCIFNCILSIICKILTTILIIVVILGFLFWLIVRPNVVHFTATDASLSQFNFTKNNALHYDLTVNITIRNPNRRVGIYYDSIETVAFYKDVAFGNQTLPGFFQHHKSTNFLNPVFKGEQVILLSSDQVSEFDKEKENGVYGINVKVLMNVRFKLGLFKSGKAKPKVRCNLQVPLKSNNGSSLSNAFQVTECDWDYKWRLFH 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00794 244 PANTHER OS05G0367900 PROTEIN 53 221 IPR044839 GO:0098542
Vifa3g00794 244 Pfam Late embryogenesis abundant protein 108 211 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00794 Vifa-Chr3 177315328 177316062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00794 75 217 SNARE and Associated Proteins AT1G32270 35.664 2.06e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00794 - - aprc:113873272 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03297 5 1088610917 1088611603 Vifa3g00794 3 177315328 177316062 PCT