Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00793 ATGGCTCAACTGCAACCCGACAACCGTAGCAGAAGAGCCTGTTGCTGCCGCCTCAGCATAATTTGGAAGCTCCTCGTAACAATAGTTCTCATCGTTGCTCTCATAGTCTTCGTTTTATTCCTCATCGTCCAACCACAATCCTTCAAATTCAGTGTCAAAGAAGCCAAACTCACCCAATTCAACTACACCACCAAAACCAACACCCTCCATTACAACCTCGTACTCAACTTCACCGCACGTAACCCAAACAAAAAACTCAACATCTACTACGATGCAATTAAAGGACATGTATCCTACGAAGGAACAAGGTTTGCATCAACGGATGTAATAAGCTTAAACTCTTTCGGCCGTCAATACACAAAAACCTCGAGTCCTATAAATGGTGTTTTTTCTGGGCAACGTGTTGTGGTTTTTGACCATGATCAGGTTTCTGATTTTGAACGTGATAAGAATGATGGAGTTTTCCGTATTGATGTGAAATTATACTTTACGATGAGGTTTAGGCTTGGTGATTTTATTTTTCCATATACTAAGGGCAACATTAAATGTGGGATTGATGTTCCTTTTGGTTCTAATGGGACTAAGCTCATGAATGCATTTGAACCCACCACATGTGAAGTTAATTTTTAA 630 0.4032 MAQLQPDNRSRRACCCRLSIIWKLLVTIVLIVALIVFVLFLIVQPQSFKFSVKEAKLTQFNYTTKTNTLHYNLVLNFTARNPNKKLNIYYDAIKGHVSYEGTRFASTDVISLNSFGRQYTKTSSPINGVFSGQRVVVFDHDQVSDFERDKNDGVFRIDVKLYFTMRFRLGDFIFPYTKGNIKCGIDVPFGSNGTKLMNAFEPTTCEVNF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00793 209 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 8 189 - -
Vifa3g00793 209 Pfam Late embryogenesis abundant protein 77 173 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00793 Vifa-Chr3 177246826 177247455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00793 42 194 SNARE and Associated Proteins AT1G32270 30.128 2.60e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00793 - - tpra:123903297 278.87